Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I5776_RS00535 Genome accession   NZ_CP065425
Coordinates   101804..103180 (+) Length   458 a.a.
NCBI ID   WP_202778528.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96804..108180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS00515 (I5776_00515) - 97011..97472 (+) 462 WP_202778524.1 CtsR family transcriptional regulator -
  I5776_RS00520 (I5776_00520) - 97490..98038 (+) 549 WP_202778525.1 UvrB/UvrC motif-containing protein -
  I5776_RS00525 (I5776_00525) - 98035..99108 (+) 1074 WP_202778526.1 protein arginine kinase -
  I5776_RS00530 (I5776_00530) clpC 99121..101562 (+) 2442 WP_202778527.1 ATP-dependent protease ATP-binding subunit ClpC -
  I5776_RS00535 (I5776_00535) radA 101804..103180 (+) 1377 WP_202778528.1 DNA repair protein RadA Machinery gene
  I5776_RS00540 (I5776_00540) disA 103185..104258 (+) 1074 WP_202778529.1 DNA integrity scanning diadenylate cyclase DisA -
  I5776_RS00545 (I5776_00545) - 104404..105498 (+) 1095 WP_202778530.1 PIN/TRAM domain-containing protein -
  I5776_RS00550 (I5776_00550) ispD 105516..106205 (+) 690 WP_202778531.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I5776_RS00555 (I5776_00555) ispF 106338..106814 (+) 477 WP_202778532.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49931.55 Da        Isoelectric Point: 7.5074

>NTDB_id=509424 I5776_RS00535 WP_202778528.1 101804..103180(+) (radA) [Heyndrickxia vini strain JCM 19841]
MAKKTTKFICQSCGYESAKWMGRCPGCNEWNKMVEEVEITGKPRKGAFLHSPGGGLAKATPITSIVSEQEERVLTELKEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLSKHSHKVLYISGEESVKQTKLRADRLDISSETLYVFSETNLEAIH
QTIQEITPQFVVIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDSVLYF
EGERHHSYRILRAVKNRFGSTNEMAIFEMKEFGLTEVNNPSEIFLEERSKGASGSTVVASMEGTRPVLVEIQALISPSIY
GMPRRMGTGIDHNRVTLLMAVLEKRVGLLLQNHDAYLKVAGGIKLDEPAIDLGIIISIASSFRDQPTNADDCIVGEVGLT
GEVRRVSRIEQRVQEAAKLGFSRIILPKNNLGGWKIPQGIQVIGVSTVQEALQHALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=509424 I5776_RS00535 WP_202778528.1 101804..103180(+) (radA) [Heyndrickxia vini strain JCM 19841]
ATGGCAAAAAAGACAACAAAATTTATTTGCCAGTCATGCGGGTACGAATCTGCAAAATGGATGGGAAGATGTCCGGGATG
TAATGAATGGAACAAAATGGTGGAGGAAGTTGAAATAACTGGTAAACCTCGAAAAGGAGCATTTTTGCATTCTCCTGGAG
GTGGTTTAGCAAAAGCAACTCCTATAACTTCGATTGTCTCTGAGCAAGAAGAAAGAGTCCTTACTGAATTAAAAGAGCTT
AATAGAGTATTGGGCGGGGGAGTGGTTCCAGGATCACTTGTATTAATTGGCGGAGACCCTGGAATTGGAAAGTCTACACT
TCTTCTTCAAGTATCATCTCAATTATCTAAACATAGTCACAAGGTATTATATATATCAGGTGAGGAATCCGTTAAACAAA
CAAAACTCCGTGCGGATCGTCTTGATATTTCATCAGAAACTCTTTATGTATTTTCCGAAACCAATCTTGAAGCGATTCAT
CAAACCATTCAAGAAATTACTCCGCAATTTGTTGTAATTGATTCCATCCAAACAATTTATCATCCAGAGGTAACTTCTGC
ACCCGGCAGTGTCTCGCAGGTTAGAGAGTGTACAGCTGAATTAATGAGAATTGCAAAAACAAAAGGTATTGCAATTTTTA
TTGTTGGGCATGTTACGAAAGAGGGATCAATTGCTGGTCCAAGACTTTTAGAGCATATGGTAGATTCAGTGCTTTACTTT
GAAGGTGAGCGCCACCATTCATATCGAATATTAAGGGCGGTTAAAAACCGATTCGGTTCTACAAATGAAATGGCAATTTT
TGAAATGAAGGAGTTTGGACTTACAGAAGTAAATAATCCTTCGGAAATCTTTTTGGAGGAACGGTCGAAGGGAGCATCTG
GGTCAACTGTGGTTGCCTCAATGGAAGGAACGAGGCCGGTTCTCGTAGAAATTCAGGCCCTTATATCCCCTTCTATATAT
GGAATGCCAAGGAGAATGGGAACGGGCATAGATCATAATCGTGTGACATTATTGATGGCTGTATTAGAAAAAAGAGTTGG
GTTATTATTGCAAAACCATGATGCTTATTTAAAAGTTGCTGGGGGAATAAAGTTAGATGAGCCGGCGATTGACCTAGGAA
TTATTATTAGTATTGCATCCAGCTTCCGTGATCAGCCAACTAATGCGGATGATTGTATAGTCGGAGAGGTTGGTCTTACG
GGAGAAGTAAGACGAGTTTCTCGAATTGAACAACGTGTTCAGGAGGCAGCAAAATTAGGGTTTAGTAGAATCATTTTGCC
AAAAAATAATCTTGGCGGATGGAAAATACCTCAAGGAATACAAGTAATAGGAGTTTCAACTGTTCAGGAAGCATTACAAC
ATGCACTAGGAGGATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.652

100

0.76
  radA Streptococcus pneumoniae Rx1

62.227

100

0.622
  radA Streptococcus pneumoniae D39

62.227

100

0.622
  radA Streptococcus pneumoniae R6

62.227

100

0.622
  radA Streptococcus pneumoniae TIGR4

62.227

100

0.622
  radA Streptococcus mitis NCTC 12261

62.227

100

0.622
  radA Streptococcus mitis SK321

62.227

100

0.622