Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I5818_RS25105 Genome accession   NZ_CP065424
Coordinates   5022525..5023475 (-) Length   316 a.a.
NCBI ID   WP_058006801.1    Uniprot ID   A0A8E2I8V8
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5017525..5028475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS25085 (I5818_25100) - 5018541..5019557 (+) 1017 WP_071976363.1 DUF1646 family protein -
  I5818_RS25090 (I5818_25105) - 5019679..5020650 (-) 972 WP_078111365.1 siderophore ABC transporter substrate-binding protein -
  I5818_RS25095 (I5818_25110) - 5020830..5021588 (-) 759 WP_209391832.1 ABC transporter ATP-binding protein -
  I5818_RS25100 (I5818_25115) - 5021585..5022532 (-) 948 WP_071976360.1 iron chelate uptake ABC transporter family permease subunit -
  I5818_RS25105 (I5818_25120) ceuB 5022525..5023475 (-) 951 WP_058006801.1 ABC transporter permease Machinery gene
  I5818_RS25110 (I5818_25125) - 5023802..5024128 (-) 327 WP_078110856.1 potassium channel family protein -
  I5818_RS25115 (I5818_25130) - 5024463..5025185 (-) 723 WP_058006161.1 amino acid ABC transporter ATP-binding protein -
  I5818_RS25120 (I5818_25135) - 5025182..5025835 (-) 654 WP_058006160.1 amino acid ABC transporter permease -
  I5818_RS25125 (I5818_25140) - 5025932..5026753 (-) 822 WP_058006159.1 basic amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34586.87 Da        Isoelectric Point: 9.7218

>NTDB_id=509416 I5818_RS25105 WP_058006801.1 5022525..5023475(-) (ceuB) [Heyndrickxia oleronia strain DSM 9356]
MKKVVLILMFIVLSIISLFVGVQNITPLDIFHLTDEQKDILLISRLPRLVSLILAGASMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVSLIIFSSASMLEKMVLASLFALIGTFVFMKVLDKIKFKDAIFIPLVGLMFGNIISSITTFFAYKHDLI
QSISSWLQGDFSMVMSGRYEMIYISIPLLILAYLFAGKFTLAGMGEDFAVNLGLNYKVVVNIGLVIVALSATSVLLTVGT
IPFLGLVVPNIVSIYNGDNLKKNLSQTALLGAVFLLFCDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLMRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=509416 I5818_RS25105 WP_058006801.1 5022525..5023475(-) (ceuB) [Heyndrickxia oleronia strain DSM 9356]
ATGAAAAAAGTAGTTTTAATACTCATGTTTATTGTTCTATCAATTATTTCATTATTTGTAGGTGTTCAAAATATTACACC
ACTTGATATTTTTCATCTTACTGATGAACAAAAAGACATTTTGCTTATTAGCAGATTGCCAAGATTAGTTAGTTTGATAT
TAGCTGGAGCTAGTATGAGTATATGTGGTTTGATTATGCAGCAGTTATCCCGGAATAAGTTTGTATCACCAACGACTGCT
GGAACGATGGATTCTGCGAGATTAGGGATTCTTGTTTCCTTAATTATTTTCTCGTCAGCCAGTATGCTGGAAAAAATGGT
GTTAGCTTCTTTATTTGCACTTATAGGAACATTCGTGTTTATGAAGGTTCTAGATAAAATTAAGTTCAAGGATGCCATCT
TTATTCCACTTGTTGGTTTAATGTTCGGGAATATTATTAGCTCGATTACCACGTTTTTTGCTTATAAGCATGATTTGATA
CAGAGTATATCATCATGGCTGCAGGGGGATTTCTCCATGGTAATGTCAGGGAGATATGAAATGATCTATATCAGTATTCC
TCTGCTTATCCTAGCGTATTTATTTGCAGGTAAATTTACATTAGCAGGTATGGGAGAAGATTTTGCTGTAAATCTTGGCT
TAAATTATAAGGTTGTTGTAAATATTGGATTGGTAATTGTGGCATTATCTGCAACCTCAGTATTGTTAACTGTAGGGACA
ATTCCATTCCTTGGGTTGGTTGTTCCAAATATTGTTTCCATTTATAACGGTGACAATTTAAAGAAAAACCTTTCTCAAAC
TGCCCTATTAGGTGCCGTGTTCTTGTTGTTCTGTGACATTTTAGGCCGCATCATCATTTATCCATATGAAATTCCAATTG
GATTAACGGTTGGTGTAATAGGAAGTGGTATTTTTCTTTACTTACTTATGAGGAGAAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.09

98.734

0.554