Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I5818_RS17290 Genome accession   NZ_CP065424
Coordinates   3463839..3465656 (-) Length   605 a.a.
NCBI ID   WP_078110301.1    Uniprot ID   A0A8E2I7J5
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3458839..3470656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS17265 (I5818_17275) - 3459341..3459991 (-) 651 WP_058004823.1 GTP pyrophosphokinase -
  I5818_RS17270 (I5818_17280) - 3460139..3460711 (+) 573 WP_078110300.1 CYTH domain-containing protein -
  I5818_RS17275 (I5818_17285) - 3460835..3461476 (+) 642 WP_058004821.1 lytic transglycosylase domain-containing protein -
  I5818_RS17280 (I5818_17290) - 3461655..3462056 (+) 402 WP_058004820.1 globin -
  I5818_RS17285 (I5818_17295) - 3462053..3462925 (+) 873 WP_058004819.1 ClpXP adapter SpxH family protein -
  I5818_RS17290 (I5818_17300) pepF 3463839..3465656 (-) 1818 WP_078110301.1 oligoendopeptidase F Regulator
  I5818_RS17295 (I5818_17305) - 3465743..3466927 (-) 1185 WP_078111537.1 competence protein CoiA -
  I5818_RS17300 (I5818_17310) mecA 3467077..3467733 (-) 657 WP_058004816.1 adaptor protein MecA -
  I5818_RS17305 (I5818_17315) spxA 3468436..3468831 (-) 396 WP_058004815.1 transcriptional regulator SpxA -
  I5818_RS17310 (I5818_17320) - 3469179..3469751 (-) 573 WP_058004814.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69537.89 Da        Isoelectric Point: 4.7002

>NTDB_id=509399 I5818_RS17290 WP_078110301.1 3463839..3465656(-) (pepF) [Heyndrickxia oleronia strain DSM 9356]
MTNTTTKSLPSRNEVQEELTWRLEDIFANDEAWDKEYKEVKELLPSAEQFKGKLGDNAEKLFEALTFQDEVAERLGKLYA
YSHMRSDQDTTNSFYQGLDSRMNSLLAEMGSAFAYLVPEILSIDEDKLASFLNEKSELQVYKHALEQINLQRPHVLSADQ
EALLAQAAEVMNASSNTFGMLNNADLEFPTIKDENGEEVQITHGRYTRFLESADQRVRKEAFEKLYETYGNFKNTFASTL
GGQVKRDNFNAKVRNYQSAREAALSNNNIPESVYDNLVNTVNKNLHLLHKYVKLRKKVLGVDELHMYDLYTPLVKDVEMK
VTYEEAKEMVLKGLAPLGEEYQEILKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHSV
HSYYTRKNQPYTYGDYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKEQN
GEALTAEMLTKEYYELNKKYFGGDDIVIDEQIGLEWSRIPHFYYNYYVYQYATGFSAATALSAQILEEGKPAVERYIKNF
LSAGSSDYPIEVLKKAGVDMTSSQPIEAALKVFEEKLNELESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=509399 I5818_RS17290 WP_078110301.1 3463839..3465656(-) (pepF) [Heyndrickxia oleronia strain DSM 9356]
ATGACTAATACAACAACAAAATCACTACCAAGCCGAAATGAGGTTCAGGAAGAGCTAACTTGGAGATTAGAAGATATTTT
TGCCAATGATGAAGCTTGGGATAAGGAATATAAAGAAGTAAAAGAATTATTACCAAGTGCAGAGCAGTTTAAGGGGAAAC
TAGGAGATAATGCAGAGAAACTTTTCGAAGCATTAACTTTTCAAGATGAGGTTGCTGAAAGATTAGGCAAGTTATATGCA
TACTCTCATATGCGTAGTGACCAAGATACTACCAATTCATTTTATCAAGGTTTAGATAGCCGCATGAATAGTCTCCTTGC
AGAAATGGGGAGCGCATTTGCTTACTTAGTTCCAGAGATTTTATCTATTGATGAGGATAAATTAGCAAGTTTTCTAAATG
AAAAAAGTGAATTACAAGTGTACAAACATGCACTTGAACAAATTAATCTCCAAAGACCACATGTATTATCAGCAGATCAA
GAAGCATTATTGGCACAAGCAGCAGAAGTGATGAATGCTTCTAGTAATACGTTTGGTATGTTAAATAATGCGGATCTTGA
ATTTCCAACCATTAAAGATGAGAATGGCGAAGAAGTGCAAATCACACATGGTCGTTATACTCGTTTCTTAGAAAGTGCTG
ATCAACGTGTTCGTAAAGAAGCATTTGAAAAGCTATATGAAACATACGGTAATTTCAAAAATACATTTGCTAGTACATTA
GGTGGTCAAGTAAAACGAGATAACTTCAATGCAAAAGTAAGAAATTATCAATCTGCACGTGAAGCGGCATTATCAAATAA
TAATATACCTGAAAGTGTTTATGATAATCTGGTGAATACCGTTAACAAGAATCTTCATCTTTTACATAAGTATGTGAAGC
TGCGTAAAAAGGTATTAGGTGTTGATGAACTACATATGTATGATTTGTATACACCTCTTGTTAAAGATGTAGAAATGAAA
GTAACATATGAAGAAGCAAAAGAAATGGTTTTAAAAGGTCTTGCCCCATTAGGTGAAGAATATCAAGAGATCTTAAAAGA
AGGCTTTGAAAATCGATGGGTTGATGTGGTTGAAAATAAGGGGAAACGGAGTGGTGCCTATTCATCCGGAGCATATGGAA
CAAATCCTTATATTTTGATGAACTGGCAGGACAATGTGAATAATCTTTTTACCTTAGCACATGAATTTGGTCACAGTGTT
CATAGTTATTACACAAGAAAAAATCAGCCATATACGTATGGGGATTACTCAATTTTTGTTGCTGAAGTGGCTTCTACATG
TAATGAAGCTTTACTAAATGATTATTTATTAAAAACGATTGATGATGAGCAAAAGAGAATTTATTTACTTAATCATTACC
TAGAAGGCTTCAGAGGTACAGTTTTCCGCCAAACGATGTTTGCAGAGTTTGAACATTTAATCCATCAAAAAGAACAAAAT
GGAGAAGCATTAACTGCCGAAATGCTAACGAAAGAATATTATGAGCTGAATAAAAAATATTTCGGTGGAGATGATATTGT
AATTGATGAACAAATAGGATTAGAATGGTCACGAATTCCACATTTCTACTACAATTATTACGTTTATCAATATGCAACAG
GTTTTAGTGCTGCAACTGCATTAAGTGCTCAAATTCTTGAAGAAGGGAAACCTGCGGTTGAACGTTATATTAAGAATTTC
TTATCTGCGGGTAGTTCAGATTATCCAATTGAAGTGCTAAAGAAAGCAGGCGTGGATATGACTTCTTCACAACCAATTGA
AGCAGCATTGAAGGTGTTTGAAGAAAAACTTAATGAGCTTGAAAGCTTATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(210-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.512

0.491