Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | I5818_RS09495 | Genome accession | NZ_CP065424 |
| Coordinates | 1900282..1901382 (+) | Length | 366 a.a. |
| NCBI ID | WP_078111013.1 | Uniprot ID | - |
| Organism | Heyndrickxia oleronia strain DSM 9356 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1895282..1906382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I5818_RS09475 (I5818_09470) | - | 1897224..1898348 (+) | 1125 | WP_209391897.1 | hypothetical protein | - |
| I5818_RS09480 (I5818_09475) | - | 1898387..1898560 (-) | 174 | WP_065107192.1 | DUF2759 domain-containing protein | - |
| I5818_RS09485 (I5818_09480) | - | 1898783..1899415 (+) | 633 | WP_058002182.1 | MBL fold metallo-hydrolase | - |
| I5818_RS09490 (I5818_09485) | - | 1899818..1900060 (-) | 243 | WP_058002183.1 | DUF2626 domain-containing protein | - |
| I5818_RS09495 (I5818_09490) | comGA | 1900282..1901382 (+) | 1101 | WP_078111013.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| I5818_RS09500 (I5818_09495) | comGB | 1901291..1902361 (+) | 1071 | WP_083498326.1 | competence type IV pilus assembly protein ComGB | - |
| I5818_RS09505 (I5818_09500) | comGC | 1902377..1902700 (+) | 324 | WP_078111011.1 | competence type IV pilus major pilin ComGC | - |
| I5818_RS09510 (I5818_09505) | comGD | 1902697..1903140 (+) | 444 | WP_058002187.1 | competence type IV pilus minor pilin ComGD | - |
| I5818_RS09515 (I5818_09510) | - | 1903130..1903540 (+) | 411 | WP_058002188.1 | type II secretion system protein | - |
| I5818_RS09520 (I5818_09515) | comGF | 1903443..1903856 (+) | 414 | WP_161809502.1 | competence type IV pilus minor pilin ComGF | - |
| I5818_RS09525 (I5818_09520) | comGG | 1903873..1904247 (+) | 375 | WP_180211797.1 | competence type IV pilus minor pilin ComGG | - |
| I5818_RS09530 (I5818_09525) | - | 1904263..1904781 (+) | 519 | WP_235849888.1 | shikimate kinase | - |
| I5818_RS09535 (I5818_09530) | - | 1904807..1904983 (+) | 177 | WP_065107193.1 | YqzE family protein | - |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 41252.78 Da Isoelectric Point: 9.3065
>NTDB_id=509382 I5818_RS09495 WP_078111013.1 1900282..1901382(+) (comGA) [Heyndrickxia oleronia strain DSM 9356]
MSIEKIADLLLGQAINLCATDIHIIPRTKDYHVQFRFNGRLSPYCDYSLEIGERLISHFKFISSMDISERRRPQSGSFHL
MHEKKTSFRISTLPTALAKESLVIRILPQHQSITIDQISLFPMITKKLIALLMHSHGMIIFTGPTGSGKSSTMYTLVDHC
SNQLMRNVITLEDPVEQQNSSFVQVQVNEKAGITYSTGLKAILRHDPDVIMVGEIRDSETAKIAIRAALTGHLVLSTLHT
RDAKGAIYRLLEFGVEWHDIEQTLIAVSAQRLVSLKCPICGERCSRFCSNFQKGNRTAVYELLSGRMLKSVLNEAKGQNC
RSNYQTLKKVIRKGIALGYISKSEYDRWVFDEEEPNPIKGSGNVLK
MSIEKIADLLLGQAINLCATDIHIIPRTKDYHVQFRFNGRLSPYCDYSLEIGERLISHFKFISSMDISERRRPQSGSFHL
MHEKKTSFRISTLPTALAKESLVIRILPQHQSITIDQISLFPMITKKLIALLMHSHGMIIFTGPTGSGKSSTMYTLVDHC
SNQLMRNVITLEDPVEQQNSSFVQVQVNEKAGITYSTGLKAILRHDPDVIMVGEIRDSETAKIAIRAALTGHLVLSTLHT
RDAKGAIYRLLEFGVEWHDIEQTLIAVSAQRLVSLKCPICGERCSRFCSNFQKGNRTAVYELLSGRMLKSVLNEAKGQNC
RSNYQTLKKVIRKGIALGYISKSEYDRWVFDEEEPNPIKGSGNVLK
Nucleotide
Download Length: 1101 bp
>NTDB_id=509382 I5818_RS09495 WP_078111013.1 1900282..1901382(+) (comGA) [Heyndrickxia oleronia strain DSM 9356]
ATGTCCATAGAAAAAATTGCTGATTTATTACTGGGACAAGCAATCAATTTATGTGCAACAGATATCCATATTATCCCAAG
AACAAAAGATTACCATGTACAATTTAGATTTAACGGAAGACTCTCTCCATATTGTGATTATTCATTAGAAATTGGAGAAA
GGCTAATATCTCATTTTAAATTTATCTCCTCAATGGATATTAGTGAAAGAAGAAGACCTCAAAGTGGTTCATTTCATCTC
ATGCACGAGAAAAAGACTTCGTTTAGAATTTCTACCTTACCAACGGCCCTCGCCAAGGAAAGTCTTGTTATACGAATCCT
ACCCCAACATCAATCCATCACTATCGATCAAATTTCGCTGTTCCCTATGATTACCAAAAAATTAATCGCACTGCTCATGC
ACTCTCATGGAATGATTATTTTTACTGGACCAACCGGAAGTGGTAAATCGTCAACAATGTATACATTAGTGGATCATTGT
TCCAATCAGCTCATGCGAAATGTCATTACACTTGAAGATCCAGTAGAGCAGCAAAATAGTTCATTTGTGCAAGTGCAAGT
GAATGAAAAGGCAGGTATTACTTATAGTACTGGATTAAAGGCTATTTTACGTCATGATCCCGATGTGATTATGGTTGGGG
AAATACGGGATAGTGAAACAGCTAAAATCGCAATTAGAGCAGCGCTAACAGGACACTTGGTGCTTAGTACATTACATACG
AGGGATGCAAAGGGGGCGATTTATCGTTTATTAGAATTTGGGGTGGAATGGCATGATATTGAACAAACATTGATAGCAGT
TAGTGCACAGCGACTTGTATCATTAAAATGTCCGATTTGTGGCGAGCGATGTTCCCGTTTTTGTTCGAATTTCCAAAAAG
GAAATCGGACAGCGGTTTATGAATTATTGTCAGGAAGAATGTTGAAAAGTGTGTTAAATGAGGCCAAAGGTCAAAACTGT
CGATCGAACTATCAAACATTAAAAAAAGTAATCAGAAAGGGGATTGCACTTGGATACATTTCCAAAAGCGAATACGATCG
TTGGGTTTTTGATGAGGAAGAACCGAATCCCATTAAAGGTTCAGGGAATGTTCTTAAATAG
ATGTCCATAGAAAAAATTGCTGATTTATTACTGGGACAAGCAATCAATTTATGTGCAACAGATATCCATATTATCCCAAG
AACAAAAGATTACCATGTACAATTTAGATTTAACGGAAGACTCTCTCCATATTGTGATTATTCATTAGAAATTGGAGAAA
GGCTAATATCTCATTTTAAATTTATCTCCTCAATGGATATTAGTGAAAGAAGAAGACCTCAAAGTGGTTCATTTCATCTC
ATGCACGAGAAAAAGACTTCGTTTAGAATTTCTACCTTACCAACGGCCCTCGCCAAGGAAAGTCTTGTTATACGAATCCT
ACCCCAACATCAATCCATCACTATCGATCAAATTTCGCTGTTCCCTATGATTACCAAAAAATTAATCGCACTGCTCATGC
ACTCTCATGGAATGATTATTTTTACTGGACCAACCGGAAGTGGTAAATCGTCAACAATGTATACATTAGTGGATCATTGT
TCCAATCAGCTCATGCGAAATGTCATTACACTTGAAGATCCAGTAGAGCAGCAAAATAGTTCATTTGTGCAAGTGCAAGT
GAATGAAAAGGCAGGTATTACTTATAGTACTGGATTAAAGGCTATTTTACGTCATGATCCCGATGTGATTATGGTTGGGG
AAATACGGGATAGTGAAACAGCTAAAATCGCAATTAGAGCAGCGCTAACAGGACACTTGGTGCTTAGTACATTACATACG
AGGGATGCAAAGGGGGCGATTTATCGTTTATTAGAATTTGGGGTGGAATGGCATGATATTGAACAAACATTGATAGCAGT
TAGTGCACAGCGACTTGTATCATTAAAATGTCCGATTTGTGGCGAGCGATGTTCCCGTTTTTGTTCGAATTTCCAAAAAG
GAAATCGGACAGCGGTTTATGAATTATTGTCAGGAAGAATGTTGAAAAGTGTGTTAAATGAGGCCAAAGGTCAAAACTGT
CGATCGAACTATCAAACATTAAAAAAAGTAATCAGAAAGGGGATTGCACTTGGATACATTTCCAAAAGCGAATACGATCG
TTGGGTTTTTGATGAGGAAGAACCGAATCCCATTAAAGGTTCAGGGAATGTTCTTAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.056 |
96.995 |
0.544 |
| pilB | Glaesserella parasuis strain SC1401 |
39.193 |
94.809 |
0.372 |