Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I5818_RS00535 Genome accession   NZ_CP065424
Coordinates   104954..106330 (+) Length   458 a.a.
NCBI ID   WP_058005939.1    Uniprot ID   -
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99954..111330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS00515 (I5818_00515) - 100076..100540 (+) 465 WP_390883574.1 CtsR family transcriptional regulator -
  I5818_RS00520 (I5818_00520) - 100557..101105 (+) 549 WP_058005936.1 UvrB/UvrC motif-containing protein -
  I5818_RS00525 (I5818_00525) - 101102..102178 (+) 1077 WP_078109704.1 protein arginine kinase -
  I5818_RS00530 (I5818_00530) clpC 102191..104632 (+) 2442 WP_058005938.1 ATP-dependent protease ATP-binding subunit ClpC -
  I5818_RS00535 (I5818_00535) radA 104954..106330 (+) 1377 WP_058005939.1 DNA repair protein RadA Machinery gene
  I5818_RS00540 (I5818_00540) disA 106335..107408 (+) 1074 WP_071976246.1 DNA integrity scanning diadenylate cyclase DisA -
  I5818_RS00545 (I5818_00545) - 107555..108649 (+) 1095 WP_058005941.1 PIN/TRAM domain-containing protein -
  I5818_RS00550 (I5818_00550) ispD 108684..109373 (+) 690 WP_071976247.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I5818_RS00555 (I5818_00555) ispF 109398..109883 (+) 486 WP_058005943.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50162.69 Da        Isoelectric Point: 6.8761

>NTDB_id=509365 I5818_RS00535 WP_058005939.1 104954..106330(+) (radA) [Heyndrickxia oleronia strain DSM 9356]
MAKKTTKFICQSCGYESAKWMGRCPGCNEWNKMVEEVEITGKPRKGAFIHSPVGEVTKATPITTIVSEQEERVLTDLKEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSSQLSKDEHRVLYISGEESVKQTKLRADRLQISSDQLFVFSETNLEAIH
HTIQEISPQFVVIDSIQTIYHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDSVLYF
EGERHHSYRILRAVKNRFGSTNEMAIFEMKDYGLSEVENPSEIFLEERSKGASGSTVVASMEGTRPVLVEIQALISPSMF
GMPRRTGTGIDHNRVTLLMAVLEKRVGLLLQNHDAYLKVAGGIKIDEPAIDLAVMISIASSFKDQPTKADDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFRRAIIPSNNIGGWNFPKDIQVIGVSTVQEALQQALGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=509365 I5818_RS00535 WP_058005939.1 104954..106330(+) (radA) [Heyndrickxia oleronia strain DSM 9356]
ATGGCAAAAAAGACGACGAAATTTATTTGTCAGTCTTGTGGATATGAATCTGCTAAGTGGATGGGAAGATGCCCAGGATG
TAATGAGTGGAATAAAATGGTGGAAGAAGTCGAAATAACTGGGAAGCCTAGAAAAGGTGCATTCATTCATTCTCCTGTTG
GTGAAGTTACAAAAGCTACCCCTATTACCACAATAGTTTCTGAGCAAGAAGAAAGGGTATTAACAGACTTAAAGGAATTA
AATCGAGTGTTGGGTGGTGGAGTTGTTCCCGGTTCCCTTGTATTAATCGGTGGTGATCCAGGAATCGGTAAATCAACATT
ACTGCTTCAAGTTTCCTCCCAACTGTCTAAGGATGAACACCGAGTTTTATATATATCAGGAGAAGAATCAGTAAAACAAA
CGAAGCTACGCGCAGACCGTCTCCAAATATCGTCAGATCAATTGTTTGTGTTTTCGGAAACGAATTTAGAAGCAATTCAT
CATACTATCCAAGAGATTTCTCCACAATTTGTTGTGATCGATTCGATACAAACGATATATCACCCCGAGGTTACCTCTGC
CCCTGGTAGTGTATCACAAGTAAGAGAATGTACAGCGGAATTAATGAGAATTGCCAAAACAAAAGGAATTGCTATTTTCA
TTGTTGGGCATGTTACGAAAGAGGGCTCGATTGCGGGACCAAGATTATTAGAACATATGGTAGATTCGGTGCTTTACTTT
GAAGGAGAACGCCATCATTCTTATCGGATATTGAGGGCTGTGAAAAACCGTTTCGGTTCTACTAATGAAATGGCAATATT
TGAAATGAAGGATTATGGCTTATCTGAGGTTGAGAATCCATCAGAAATCTTTTTAGAAGAACGTTCAAAAGGGGCATCGG
GTTCAACCGTCGTCGCTTCCATGGAAGGGACACGTCCGGTCTTAGTAGAAATCCAAGCTCTAATATCCCCTTCAATGTTC
GGAATGCCAAGAAGAACAGGTACGGGGATTGATCATAATCGGGTGACATTGTTGATGGCTGTACTAGAAAAAAGAGTCGG
ATTATTATTGCAAAATCATGATGCCTACTTAAAGGTAGCAGGCGGAATTAAAATAGATGAACCTGCTATTGATCTAGCAG
TTATGATCAGCATTGCTTCTAGTTTTAAGGATCAACCGACAAAAGCAGATGATTGTATTATTGGTGAGGTTGGCCTGACA
GGAGAAGTAAGGCGAGTATCTCGCATCGAGCAAAGGGTTCAGGAAGCGGCAAAATTAGGTTTTCGAAGAGCTATCATTCC
AAGCAATAATATCGGTGGTTGGAATTTCCCGAAGGATATTCAAGTTATTGGAGTTTCCACTGTTCAAGAAGCTTTACAGC
AAGCTTTAGGAGGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.783

100

0.751
  radA Streptococcus pneumoniae Rx1

62.144

99.782

0.62
  radA Streptococcus pneumoniae D39

62.144

99.782

0.62
  radA Streptococcus pneumoniae R6

62.144

99.782

0.62
  radA Streptococcus pneumoniae TIGR4

62.144

99.782

0.62
  radA Streptococcus mitis NCTC 12261

62.144

99.782

0.62
  radA Streptococcus mitis SK321

61.926

99.782

0.618