Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KU517_RS02785 Genome accession   NZ_CP077869
Coordinates   561124..563109 (+) Length   661 a.a.
NCBI ID   WP_000229251.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 365     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556124..568109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU517_RS02755 (KU517_02750) - 557167..557265 (+) 99 WP_031844945.1 hypothetical protein -
  KU517_RS02760 (KU517_02755) prfB 557440..558550 (+) 1111 WP_010956549.1 peptide chain release factor 2 -
  KU517_RS02765 (KU517_02760) - 558704..558811 (+) 108 WP_001790093.1 hypothetical protein -
  KU517_RS02770 (KU517_02765) - 558959..559798 (+) 840 WP_000749391.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -
  KU517_RS02775 (KU517_02770) - 559972..560622 (+) 651 WP_000538141.1 YfbR-like 5'-deoxynucleotidase -
  KU517_RS02780 (KU517_02775) - 560619..560855 (+) 237 WP_000638418.1 CsbA family protein -
  KU517_RS02785 (KU517_02780) uvrB 561124..563109 (+) 1986 WP_000229251.1 excinuclease ABC subunit UvrB Machinery gene
  KU517_RS02790 (KU517_02785) uvrA 563117..565963 (+) 2847 WP_225805720.1 excinuclease ABC subunit UvrA Machinery gene
  KU517_RS02795 (KU517_02790) hprK 566573..567505 (+) 933 WP_000958224.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76662.36 Da        Isoelectric Point: 5.0538

>NTDB_id=509300 KU517_RS02785 WP_000229251.1 561124..563109(+) (uvrB) [Staphylococcus aureus strain 365]
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFK
EFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLV
VSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKER
EHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPL
GSTPYTLLDYFGDDWLIMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGP
YEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE
IKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTD
SMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAK
DLDFEKATELRDMLFELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=509300 KU517_RS02785 WP_000229251.1 561124..563109(+) (uvrB) [Staphylococcus aureus strain 365]
ATGGTTGAACATTATCCTTTTAAAATACATTCTGATTTTGAGCCTCAAGGTGACCAACCGCAAGCAATTAAAGAAATCGT
GGAAGGTATTAAAGCGGGGAAAAGACATCAAACTTTATTAGGTGCTACTGGCACAGGGAAAACATTTACGATGAGTAATG
TTATTAAAGAAGTTGGGAAACCAACGTTAATTATCGCGCATAACAAAACATTAGCAGGACAATTATATAGTGAGTTTAAA
GAGTTTTTTCCTGAAAACAGGGTGGAATACTTTGTAAGTTACTATGATTATTATCAACCAGAGGCATACGTACCGTCTAC
TGACACTTTTATTGAAAAAGATGCCTCAATCAATGATGAAATTGATCAACTACGACATTCTGCTACAAGTGCATTATTTG
AACGCGATGATGTAATTATTATTGCTAGTGTAAGTTGTATATATGGTTTAGGTAATCCTGAAGAATATAAAGATTTAGTA
GTAAGTGTTCGAGTTGGTATGGAAATGGATAGAAGTGAATTACTTAGAAAACTTGTAGATGTGCAATATACACGAAATGA
CATCGATTTCCAACGAGGAACGTTTCGAGTGCGTGGTGATGTAGTTGAAATATTCCCAGCCTCTAAAGAAGAACTTTGTA
TAAGGGTTGAGTTTTTCGGCGATGAGATTGACCGTATCCGAGAAGTTAACTACCTAACAGGTGAAGTGTTGAAAGAAAGA
GAACATTTTGCGATATTCCCAGCTTCTCACTTCGTAACACGTGAAGAAAAGTTGAAAGTTGCGATTGAACGTATTGAAAA
AGAATTGGAAGAACGATTGAAAGAATTACGAGATGAGAATAAATTACTAGAAGCGCAAAGGTTAGAACAGCGTACCAACT
ATGATTTAGAAATGATGCGAGAAATGGGATTCTGTTCAGGAATTGAAAACTATTCAGTACATTTAACGTTGCGACCACTA
GGTTCGACACCATATACTTTATTGGATTACTTTGGCGATGATTGGTTAATAATGATTGATGAATCACATGTGACGTTACC
GCAAGTTCGTGGCATGTATAACGGAGACAGAGCACGAAAACAAGTTTTAGTTGATCATGGATTTAGATTACCAAGTGCGT
TAGATAACCGCCCACTTAAATTTGAAGAATTTGAAGAAAAGACGAAACAACTTGTGTATGTATCTGCAACGCCTGGTCCA
TACGAAATTGAACATACGGATAAGATGGTTGAACAAATTATTCGTCCTACTGGTTTACTGGACCCTAAGATTGAGGTTAG
ACCTACTGAAAATCAAATTGACGATTTATTAAGTGAAATTCAAACAAGGGTTGAGCGTAATGAAAGAGTACTTGTTACAA
CACTCACTAAAAAGATGAGTGAAGATTTAACCACATATATGAAAGAAGCAGGCATTAAAGTTAACTATCTACATTCTGAA
ATTAAAACATTAGAACGAATCGAAATAATTAGAGACTTACGAATGGGTACATATGATGTTATCGTAGGTATTAATTTATT
AAGAGAGGGTATTGATATACCAGAAGTTTCTCTAGTTGTCATATTAGATGCAGATAAAGAAGGATTTTTACGTTCTAACC
GCTCATTAATTCAAACAATAGGTAGAGCTGCGCGTAACGATAAAGGTGAAGTCATTATGTATGCTGATAAAATGACTGAT
TCGATGAAGTATGCAATTGATGAGACACAACGTCGTCGAGAAATACAGATGAAACATAATGAAAAACATGGTATTACACC
TAAAACAATTAATAAAAAAATACATGATTTAATTAGTGCTACTGTTGAAAATGACGAAAATAATGACAAAGCACAAACTG
TGATACCTAAGAAGATGACGAAAAAAGAACGTCAAAAGACAATCGACAATATAGAAAAAGAAATGAAACAAGCAGCGAAA
GATTTAGATTTCGAGAAAGCTACAGAATTAAGAGATATGTTATTTGAATTAAAAGCAGAAGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(434-546)

Type III restriction enzyme, res subunit (ResIII)

(14-140)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(626-659)

UvrB interaction domain (UvrB_inter)

(161-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae D39

67.688

98.79

0.669
  uvrB Streptococcus pneumoniae TIGR4

67.688

98.79

0.669