Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KU517_RS02735 Genome accession   NZ_CP077869
Coordinates   551798..552880 (+) Length   360 a.a.
NCBI ID   WP_000370987.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 365     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546798..557880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU517_RS02715 (KU517_02710) gdpS 547168..548238 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  KU517_RS02720 (KU517_02715) - 548556..549611 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  KU517_RS02725 (KU517_02720) - 549783..550424 (-) 642 WP_000192947.1 YigZ family protein -
  KU517_RS02730 (KU517_02725) fakB1 550568..551434 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  KU517_RS02735 (KU517_02730) comFA 551798..552880 (+) 1083 WP_000370987.1 DEAD/DEAH box helicase Machinery gene
  KU517_RS02740 (KU517_02735) - 552873..553547 (+) 675 WP_001057968.1 ComF family protein -
  KU517_RS02745 (KU517_02740) hpf 553608..554180 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KU517_RS02750 (KU517_02745) secA 554594..557125 (+) 2532 WP_031844944.1 preprotein translocase subunit SecA -
  KU517_RS02755 (KU517_02750) - 557167..557265 (+) 99 WP_031844945.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42085.63 Da        Isoelectric Point: 9.8309

>NTDB_id=509299 KU517_RS02735 WP_000370987.1 551798..552880(+) (comFA) [Staphylococcus aureus strain 365]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMTNLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=509299 KU517_RS02735 WP_000370987.1 551798..552880(+) (comFA) [Staphylococcus aureus strain 365]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGACAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367