Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I5960_RS17390 Genome accession   NZ_CP065411
Coordinates   3559457..3560077 (-) Length   206 a.a.
NCBI ID   WP_007374186.1    Uniprot ID   A0AAX2EN59
Organism   Kosakonia radicincitans strain IAC-BECa95     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3554457..3565077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5960_RS17375 helD 3554693..3556747 (-) 2055 WP_227135771.1 DNA helicase IV -
  I5960_RS17380 - 3556870..3557316 (+) 447 WP_007374188.1 YccF domain-containing protein -
  I5960_RS17385 yccS 3557334..3559463 (+) 2130 WP_007374187.1 YccS family putative transporter -
  I5960_RS17390 sxy/tfoX 3559457..3560077 (-) 621 WP_007374186.1 TfoX/Sxy family DNA transformation protein Regulator
  I5960_RS17395 sulA 3560295..3560804 (+) 510 WP_007374185.1 SOS-induced cell division inhibitor SulA -
  I5960_RS17400 ompA 3561171..3562220 (+) 1050 WP_007374183.1 porin OmpA -
  I5960_RS17405 matP 3562298..3562749 (-) 452 Protein_3430 macrodomain Ter protein MatP -
  I5960_RS17410 - 3562932..3564691 (+) 1760 Protein_3431 AAA family ATPase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23637.34 Da        Isoelectric Point: 8.4759

>NTDB_id=509266 I5960_RS17390 WP_007374186.1 3559457..3560077(-) (sxy/tfoX) [Kosakonia radicincitans strain IAC-BECa95]
MEDLSYQRIYQSCECLTSLGEIRHRAHFGGYSLSVDDTVFAMVAEGELYLRACEQSAQYAITHHAPLLVFNKRGREVSLN
YYFVDQALWNDRPMLLELSAYSLDAARREKVQRSARKRLRDLPNLTFQLEMQLRDVGIMDVQTLRLLGAKASWLRLRKAN
CHLGVKILLALEGAITGLHEAALPAQTRQELMEWFTIVMKKTANPH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=509266 I5960_RS17390 WP_007374186.1 3559457..3560077(-) (sxy/tfoX) [Kosakonia radicincitans strain IAC-BECa95]
ATGGAAGACCTTTCTTATCAGCGTATATATCAATCATGTGAATGTCTCACATCGCTTGGCGAAATTCGTCACCGTGCGCA
TTTTGGCGGTTATAGCTTGTCGGTGGATGACACGGTTTTTGCAATGGTGGCCGAAGGAGAGCTTTATCTGCGGGCCTGTG
AACAAAGCGCTCAATATGCAATAACGCACCATGCGCCACTTTTAGTATTCAACAAACGTGGACGGGAGGTTTCGTTAAAT
TACTACTTTGTGGATCAGGCATTATGGAACGATCGCCCTATGCTGCTGGAACTTTCGGCATATTCTCTCGATGCTGCACG
GCGTGAAAAAGTGCAGCGCAGCGCCCGGAAACGTCTTCGCGATCTCCCTAATCTGACGTTTCAGCTCGAAATGCAGCTTC
GTGATGTCGGAATTATGGATGTACAGACGTTGCGTCTTCTTGGCGCAAAGGCCAGTTGGCTCAGGTTGCGGAAAGCGAAT
TGCCATCTGGGGGTGAAAATTCTTCTGGCGCTGGAAGGCGCTATTACTGGATTGCACGAAGCGGCGCTCCCGGCGCAGAC
GCGCCAGGAACTGATGGAGTGGTTCACTATTGTGATGAAGAAAACGGCCAATCCTCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.049

99.515

0.578