Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I5961_RS24380 Genome accession   NZ_CP065410
Coordinates   5323038..5324405 (-) Length   455 a.a.
NCBI ID   WP_085689697.1    Uniprot ID   -
Organism   Pseudomonas sp. IAC-BECa141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5318038..5329405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5961_RS24350 (I5961_24200) - 5318273..5318983 (+) 711 WP_227233590.1 GntR family transcriptional regulator -
  I5961_RS24355 (I5961_24205) yjiA 5319106..5320080 (-) 975 WP_227233592.1 GTPase -
  I5961_RS24365 (I5961_24210) - 5320242..5320439 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  I5961_RS24370 (I5961_24215) - 5320455..5322521 (-) 2067 WP_085697548.1 carbon starvation CstA family protein -
  I5961_RS24375 (I5961_24220) - 5322681..5323037 (+) 357 WP_085697549.1 PilZ domain-containing protein -
  I5961_RS24380 (I5961_24225) radA 5323038..5324405 (-) 1368 WP_085689697.1 DNA repair protein RadA Machinery gene
  I5961_RS24385 - 5324552..5324879 (-) 328 Protein_4815 catalase -
  I5961_RS24390 (I5961_24235) mscL 5325280..5325693 (+) 414 WP_085697550.1 large-conductance mechanosensitive channel protein MscL -
  I5961_RS24395 (I5961_24240) - 5325727..5326503 (-) 777 WP_227233594.1 ferredoxin--NADP reductase -
  I5961_RS24400 (I5961_24245) - 5326799..5327506 (+) 708 WP_085697552.1 autoinducer binding domain-containing protein -
  I5961_RS24405 (I5961_24250) - 5327683..5328807 (+) 1125 WP_227233596.1 methyltransferase -
  I5961_RS24410 (I5961_24255) - 5328877..5329044 (-) 168 WP_007950992.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48716.16 Da        Isoelectric Point: 6.8987

>NTDB_id=509242 I5961_RS24380 WP_085689697.1 5323038..5324405(-) (radA) [Pseudomonas sp. IAC-BECa141]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKNMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=509242 I5961_RS24380 WP_085689697.1 5323038..5324405(-) (radA) [Pseudomonas sp. IAC-BECa141]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAATACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCTCCGAGCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATTCCACGTTTTTCCACAGCCTCCGGCGAACTC
GACCGAGTGCTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTACTGATCGGCGGTGATCCTGGCATCGGCAAATCGACGAT
TCTGTTACAGACCCTGTGCAACCTCGCCAAGAACATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAACAACAGGTTG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGATCAATTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGCGAAAGTGCGGCACTGCTGGTGCGGTACGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTCGCAGGGCCGCGCGTTCTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGACGGTCGGTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAATGAACTCGGCGTATTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACACGTGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCACTTGGCC
AACCCGCGTCGAGTCACCCTGGGTCTGGACCAGAATCGTCTGGCGATGTTGTTGGCTGTTCTGCATCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAAGTACTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCCGCCGTCATGTCGAGCCTGCGTAATCGTCCGCTGCCCCACGACTTGCTGGTGTTCGGTGAAGTCGGTCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAGCGTCTGAAGGAGGCCGCCAAGCACGGTTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCAGGGTTGCAGATCATAGCGGTGACGCGGCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464