Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BANAN_RS00840 Genome accession   NC_017834
Coordinates   199785..201620 (+) Length   611 a.a.
NCBI ID   WP_014697100.1    Uniprot ID   -
Organism   Bifidobacterium animalis subsp. animalis ATCC 25527     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 194785..206620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BANAN_RS00825 (BANAN_00840) - 196029..196844 (-) 816 WP_014697097.1 ABC transporter ATP-binding protein -
  BANAN_RS00830 (BANAN_00845) - 197129..197722 (+) 594 WP_014697098.1 MarR family winged helix-turn-helix transcriptional regulator -
  BANAN_RS00835 (BANAN_00850) rcrP 197794..199713 (+) 1920 WP_014697099.1 ABC transporter ATP-binding protein Regulator
  BANAN_RS00840 (BANAN_00855) rcrQ 199785..201620 (+) 1836 WP_014697100.1 ABC transporter ATP-binding protein Regulator
  BANAN_RS00845 (BANAN_00860) - 201639..203153 (-) 1515 WP_014697101.1 polysaccharide deacetylase family protein -
  BANAN_RS00850 (BANAN_00865) - 203554..204228 (-) 675 WP_237705819.1 phosphatase PAP2 family protein -
  BANAN_RS00855 (BANAN_00870) - 204319..204954 (+) 636 WP_014697103.1 sugar O-acetyltransferase -
  BANAN_RS00860 (BANAN_00875) - 205045..205461 (+) 417 WP_014697104.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67024.29 Da        Isoelectric Point: 5.1476

>NTDB_id=50923 BANAN_RS00840 WP_014697100.1 199785..201620(+) (rcrQ) [Bifidobacterium animalis subsp. animalis ATCC 25527]
MGHGRAGAPVEKADDFGGALKELMRFSKRYIPAIVIALILGVGGAICQIIGPDYLGDMTDEITKGLPALVHGKPVLRSID
MAAVAHIGWTLVALYVGYALLSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSTGDVMSRITNDVDAVGQTLG
QSLGTLISSITLFVGSLVMMFANNWILALCAVGASLLGMVLMLVVMKFSQKYFVKQQMALGDVNGHVEEMYSGHTVVKAF
GGEADAIRRFERYNNDLYESGWKSQFISGLMMPMMNLVGNLGYVVVCVVGAALAMNGTIEFGVIVAFMLYIRLFTQPLSQ
FAQAFQNLQRCAAGSERVFTFLNEPELADESDKQPLLGYGSNGEITPVEGRVSFEHVKFGYEPNKLVIHDFSADVEPGQK
VAIVGPTGAGKTTMVNLLMRFYEIAGGKISIDGIDTKSVPRWNVHDQFSMVLQDTWVFNGTVRENVAYAKEDVTDEQVVA
ACRAVGLDRYIRSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQAAMDKLTEGRTSF
VIAHRLSTIRDADMILVMRDGDIVERGTHDELLARNGFYADIYNAQFTLAQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=50923 BANAN_RS00840 WP_014697100.1 199785..201620(+) (rcrQ) [Bifidobacterium animalis subsp. animalis ATCC 25527]
ATGGGACATGGGCGTGCAGGCGCGCCCGTGGAGAAAGCCGATGATTTCGGCGGCGCGCTCAAGGAGCTGATGCGCTTCAG
CAAACGGTACATTCCGGCGATCGTCATCGCGCTGATCCTCGGCGTCGGCGGTGCGATCTGCCAGATCATAGGGCCGGACT
ACCTCGGCGATATGACCGACGAGATCACCAAGGGACTGCCCGCGCTCGTGCACGGCAAGCCGGTGCTGCGTTCGATCGAC
ATGGCCGCGGTGGCGCACATCGGGTGGACGCTCGTGGCGCTCTACGTGGGCTACGCACTGCTTTCGTACGTGCAGAGCTG
GATGATGGCCACCGTCACGCAGCGCACGGCGCAACGCCTGCGCGCGGCCATCGACGTGAAGATGAACAAGCTGCCGCTCA
AATACTTCGACGAGCACAGCACCGGCGACGTGATGAGTCGCATCACGAACGACGTGGACGCCGTGGGGCAGACGCTCGGG
CAGTCCCTCGGCACGCTCATCTCGTCGATCACGCTGTTCGTGGGCTCGCTCGTCATGATGTTCGCGAACAACTGGATCCT
GGCATTGTGCGCAGTGGGCGCGAGCCTGCTCGGCATGGTGCTCATGCTCGTCGTGATGAAGTTCTCGCAGAAGTACTTCG
TCAAGCAGCAGATGGCACTCGGCGACGTGAACGGCCATGTGGAGGAGATGTACAGCGGGCACACCGTGGTCAAGGCCTTC
GGCGGCGAGGCCGACGCGATCCGCAGATTCGAACGCTACAACAACGACCTGTACGAATCGGGTTGGAAGAGCCAGTTCAT
CTCGGGGCTCATGATGCCGATGATGAACCTCGTGGGCAACCTCGGCTACGTGGTCGTGTGCGTGGTCGGCGCGGCGCTCG
CGATGAACGGCACCATCGAATTCGGTGTGATCGTGGCGTTCATGCTCTACATTCGCCTGTTCACGCAGCCGCTCTCGCAG
TTTGCGCAGGCGTTCCAGAATCTGCAACGCTGCGCCGCGGGCTCCGAACGTGTGTTCACCTTCCTCAACGAGCCCGAGCT
CGCCGACGAGTCCGACAAGCAACCGCTGCTCGGCTACGGCAGCAACGGCGAGATCACGCCCGTCGAAGGGCGCGTGAGCT
TCGAGCACGTGAAATTCGGGTATGAGCCGAACAAGCTCGTCATCCATGATTTCTCGGCGGACGTGGAGCCTGGGCAGAAA
GTGGCGATCGTGGGGCCCACCGGCGCGGGCAAGACGACGATGGTGAATCTGCTCATGCGATTCTACGAGATCGCCGGCGG
GAAGATCTCGATCGACGGCATCGACACGAAGAGCGTGCCGCGGTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGG
ACACCTGGGTGTTCAACGGCACCGTGCGCGAGAATGTGGCGTATGCGAAGGAAGACGTGACCGACGAGCAGGTGGTCGCC
GCCTGCCGTGCCGTGGGACTCGACCGTTACATTCGCTCGCTGCCAAACGGCTACGACACCGTGCTCGACGAGTCGGCCAC
GCTGTCGCAGGGGCAGAAGCAGCTGCTCACCATCGCGCGCGCCATGGTGCAGGATTCGCCGATCCTCATTCTCGACGAGG
CGACAAGCTCGGTCGATACGCGCACTGAGGAGCTCATCCAGGCGGCGATGGACAAGCTCACCGAGGGGCGCACCTCGTTC
GTCATCGCACACCGGCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGCGCGACGGCGACATCGTGGAGCGCGG
CACGCACGACGAGCTTCTGGCACGCAACGGCTTCTATGCCGACATCTACAACGCGCAGTTCACACTCGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-318)

ABC transporter (ABC_tran)

(389-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.008

96.399

0.53

Multiple sequence alignment