Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BANAN_RS00835 Genome accession   NC_017834
Coordinates   197794..199713 (+) Length   639 a.a.
NCBI ID   WP_014697099.1    Uniprot ID   A0AAV2W0W8
Organism   Bifidobacterium animalis subsp. animalis ATCC 25527     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 192794..204713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BANAN_RS08750 - 193712..196032 (-) 2321 Protein_160 ABC transporter permease -
  BANAN_RS00825 (BANAN_00840) - 196029..196844 (-) 816 WP_014697097.1 ABC transporter ATP-binding protein -
  BANAN_RS00830 (BANAN_00845) - 197129..197722 (+) 594 WP_014697098.1 MarR family winged helix-turn-helix transcriptional regulator -
  BANAN_RS00835 (BANAN_00850) rcrP 197794..199713 (+) 1920 WP_014697099.1 ABC transporter ATP-binding protein Regulator
  BANAN_RS00840 (BANAN_00855) rcrQ 199785..201620 (+) 1836 WP_014697100.1 ABC transporter ATP-binding protein Regulator
  BANAN_RS00845 (BANAN_00860) - 201639..203153 (-) 1515 WP_014697101.1 polysaccharide deacetylase family protein -
  BANAN_RS00850 (BANAN_00865) - 203554..204228 (-) 675 WP_237705819.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 639 a.a.        Molecular weight: 70937.86 Da        Isoelectric Point: 5.1673

>NTDB_id=50922 BANAN_RS00835 WP_014697099.1 197794..199713(+) (rcrP) [Bifidobacterium animalis subsp. animalis ATCC 25527]
MIRIMKYLSKTEIGQLVLSLVTIVGQVYFDLELPSYMSQITRLVETPGSQMRDIWIAGGKMLLVSLGSLACAVVTGYFAA
RVAASFGQRLRSLEFRKVESFGPSEMHRFSTASLITRSTNDITQIQMFITMGLQMLIKAPIMAVWAVCKIAGEGFEWTLA
TGIAVAILIISIAVLMVLVMPKFKAMQQLTDDINLVTRENLTGMRVVRAYNAQDYQEGKFERANSNLTNTQLFTNRAMSV
MMPLMGTIMNGLSLAIYWIGAYLIQDAGLTDKLTLFSNMVVFSSYAMQVVMSFLLMSMVFVLWPRADVSAHRVLEVLDTD
PLVKSGTAKRGLTVQEAKQRGIITPAERARYADDLELAGEIEFRDVSFTYPDSREAMLEHISFTANRGDTVAIIGSTGSG
KSSLINLVPRFYDATDGEVLVDGMNVREYDLKTLRDKIGYVPQRSFLFKGTVESNVSYGDRPDEPENVPMIDVSRMSGRK
AEREFLKADEARELTAQEANRVREASDVAQATEFVSKMPKGFQSPIAQGGTNVSGGQKQRLSIARAVYRDPEILIFDDSF
SALDFKTDREVRDALKETAKDATKLIVAQRVGTIMDADCILVLEDGKVVGQGTHRELLETCEVYQEIAKSQLSEEELSA

Nucleotide


Download         Length: 1920 bp        

>NTDB_id=50922 BANAN_RS00835 WP_014697099.1 197794..199713(+) (rcrP) [Bifidobacterium animalis subsp. animalis ATCC 25527]
ATGATACGAATCATGAAATATCTCTCCAAAACGGAGATAGGGCAGCTGGTGTTGTCGCTGGTCACCATTGTGGGCCAGGT
GTACTTCGACCTCGAACTGCCAAGCTATATGTCACAGATCACGCGGCTCGTGGAGACGCCGGGCAGCCAGATGCGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGCTCGCATGCGCGGTGGTCACCGGCTACTTCGCCGCG
CGCGTGGCCGCCTCGTTCGGCCAGCGTCTGCGCTCGCTCGAGTTCCGCAAGGTGGAGTCGTTCGGGCCGTCCGAAATGCA
CCGCTTCTCCACGGCGAGCCTGATCACGCGTTCGACGAACGACATCACGCAGATTCAGATGTTCATCACGATGGGCTTGC
AGATGCTCATCAAGGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGATCCTCATCATCTCGATCGCCGTGCTCATGGTGCTCGTCATGCCGAAGTTCAAGGCAATGCA
GCAGCTCACCGACGACATCAATCTGGTGACGCGCGAGAATCTGACCGGCATGCGCGTCGTGCGCGCCTACAATGCCCAGG
ACTACCAGGAAGGCAAGTTCGAGCGGGCGAACAGCAATCTGACGAACACACAGCTGTTCACGAACCGCGCGATGTCGGTG
ATGATGCCGCTCATGGGCACGATCATGAACGGGCTGTCGCTCGCGATCTACTGGATCGGCGCCTACCTGATCCAGGACGC
CGGCCTGACCGACAAACTCACGCTGTTCTCGAACATGGTCGTGTTCTCCAGCTACGCCATGCAGGTGGTGATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTGTGGCCGCGCGCCGACGTCTCCGCACACCGCGTGCTCGAAGTGCTCGACACCGAC
CCGCTCGTCAAGTCCGGCACCGCCAAGCGTGGGCTCACGGTGCAGGAGGCCAAGCAGCGCGGAATCATCACGCCAGCGGA
ACGTGCGCGATATGCCGACGACCTCGAGCTCGCCGGCGAGATCGAATTCCGCGACGTGAGCTTCACCTACCCCGATTCAC
GCGAGGCGATGCTCGAACACATCAGTTTCACGGCGAACAGGGGAGACACGGTGGCGATCATCGGCTCCACCGGTTCGGGC
AAGTCGTCGCTCATCAATCTCGTGCCGCGCTTCTACGATGCGACGGACGGCGAGGTGCTCGTGGACGGCATGAATGTGCG
CGAATACGACTTGAAGACATTGCGCGACAAGATCGGCTACGTGCCGCAGCGCTCCTTCCTGTTCAAAGGCACCGTCGAAT
CGAATGTGAGCTATGGCGACCGGCCCGACGAACCCGAAAACGTGCCGATGATCGACGTCTCGCGCATGAGCGGCCGCAAG
GCGGAACGGGAGTTCCTCAAGGCCGACGAGGCGCGCGAGCTCACCGCGCAGGAGGCGAACCGCGTGCGCGAGGCGAGCGA
CGTCGCACAGGCCACCGAATTCGTAAGCAAGATGCCGAAAGGCTTCCAGTCGCCGATCGCCCAGGGTGGCACGAATGTGT
CGGGCGGCCAGAAACAGCGCCTGTCGATTGCGCGCGCCGTGTACCGCGACCCGGAGATTCTGATCTTCGACGACTCGTTC
TCGGCACTCGACTTCAAAACCGACCGCGAGGTGCGCGACGCGTTGAAGGAGACGGCGAAGGATGCGACGAAGCTCATCGT
GGCGCAGCGCGTCGGCACGATCATGGACGCGGACTGCATTCTCGTGCTCGAGGACGGCAAGGTGGTGGGTCAAGGCACGC
ACCGCGAACTGCTCGAGACCTGCGAGGTGTACCAGGAGATCGCGAAATCGCAGCTGAGCGAGGAGGAGCTCAGTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(378-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.69

100

0.495

Multiple sequence alignment