Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I3K84_RS12110 Genome accession   NZ_CP065406
Coordinates   2512319..2513701 (-) Length   460 a.a.
NCBI ID   WP_011803649.1    Uniprot ID   A0AAX1WWC5
Organism   Diaphorobacter sp. JS3051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2507319..2518701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K84_RS12085 (I3K84_12085) - 2508037..2509194 (-) 1158 WP_196994594.1 glycosyltransferase -
  I3K84_RS12090 (I3K84_12090) - 2509203..2510510 (-) 1308 WP_172205380.1 O-antigen ligase -
  I3K84_RS12095 (I3K84_12095) - 2510613..2510819 (-) 207 WP_123675308.1 zinc-finger domain-containing protein -
  I3K84_RS12100 (I3K84_12100) - 2510824..2511762 (-) 939 WP_196994595.1 branched-chain amino acid transaminase -
  I3K84_RS12105 (I3K84_12105) - 2511809..2512249 (-) 441 WP_196994596.1 glycerate kinase -
  I3K84_RS12110 (I3K84_12110) radA 2512319..2513701 (-) 1383 WP_011803649.1 DNA repair protein RadA Machinery gene
  I3K84_RS12115 (I3K84_12115) - 2513811..2513993 (+) 183 WP_047350205.1 hypothetical protein -
  I3K84_RS12120 (I3K84_12120) - 2514141..2514755 (+) 615 WP_012655299.1 glutathione S-transferase family protein -
  I3K84_RS12125 (I3K84_12125) - 2514658..2515209 (-) 552 WP_231403315.1 hypothetical protein -
  I3K84_RS12130 (I3K84_12130) alr 2515218..2516315 (-) 1098 WP_103736852.1 alanine racemase -
  I3K84_RS12135 (I3K84_12135) lplT 2516456..2517733 (+) 1278 WP_011803644.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47828.30 Da        Isoelectric Point: 6.8876

>NTDB_id=509214 I3K84_RS12110 WP_011803649.1 2512319..2513701(-) (radA) [Diaphorobacter sp. JS3051]
MAKEKTIFSCTECGGTSPRWLGKCPSCGAWNTLIESVPDAGPGKNRLSGAGQYAGLAQAQAVMPLAAIEATEVARTASGI
EELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGLDASQVNVLAEIQLE
KILATVEATQPAVCVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRMAKATGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVANPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDG
GGPSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVG
LAGEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIAGLEIHAVERVDEAMTAVRGLD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=509214 I3K84_RS12110 WP_011803649.1 2512319..2513701(-) (radA) [Diaphorobacter sp. JS3051]
ATGGCCAAAGAAAAAACCATCTTCTCCTGCACCGAATGCGGTGGCACCAGTCCGCGCTGGCTGGGCAAATGCCCCTCCTG
CGGTGCGTGGAACACCCTGATCGAATCCGTGCCCGACGCCGGACCGGGCAAGAACCGCCTGAGCGGGGCCGGCCAGTACG
CGGGCCTGGCCCAGGCGCAAGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGAGGTGGCGCGCACGGCGAGCGGCATC
GAGGAACTGGACCGCGTGCTGGGCGGTGGCGTGGTCGAGGGCGGAGTGGTGCTCATCGGCGGCGATCCGGGCATCGGCAA
GTCCACGCTGCTCTTGCAGGCGATGGACGCGCTGCAGCGCGCGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAGAGCG
GCGCCCAGGTGGCGTTGCGTTCGCGCCGGCTGGGGCTGGATGCGAGCCAGGTGAACGTGTTGGCCGAGATCCAACTCGAA
AAAATCCTCGCCACCGTGGAGGCCACGCAGCCCGCGGTGTGCGTCATCGACTCCATCCAGACCGTCTATTCCGACCAGCT
CACCAGCGCCCCCGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCCCACCTCACGCGCATGGCCAAGGCCACGGGCATCG
CCGTCATCCTGGTGGGCCACGTGACCAAGGAGGGTGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAGGGAGACACGCACAGCAGCTTCCGTCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGGCGAACCCCAGTGCCATTTTCTTGAGCCAGCACAGCGAGC
CGGTGCCCGGCAGCTGTGTGCTGGTCACGCTGGAGGGCACGCGGCCGATGCTGGTGGAGATCCAGGCGCTGGTCGACGGC
GGCGGCCCCAGCCCACGGCGCCTGTCGGTGGGGCTGGAGCGCGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCGCCGACCAGGACGTATTCGTCAATGCCGTCGGGGGCGTGCGCATCAGCGAACCCGCGGCCGACC
TGGCCGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGGCGTTGCCCAAGGGCTTCATCGCGTTTGGCGAGGTGGGC
CTGGCTGGCGAGGTGCGCCCCGCGCCGCGTGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTCACGGTGGCCGT
GGTGCCCAAAGCCAATGCGCCCAAGAAGCCGATCGCCGGGCTGGAGATCCACGCAGTGGAGCGCGTGGACGAGGCCATGA
CTGCCGTGCGCGGGCTGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-454)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.13

0.485
  radA Streptococcus mitis NCTC 12261

47.046

99.348

0.467
  radA Streptococcus pneumoniae D39

48.848

94.348

0.461
  radA Streptococcus pneumoniae TIGR4

48.848

94.348

0.461
  radA Streptococcus mitis SK321

48.848

94.348

0.461
  radA Streptococcus pneumoniae R6

48.848

94.348

0.461
  radA Streptococcus pneumoniae Rx1

48.848

94.348

0.461