Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I3K84_RS11290 Genome accession   NZ_CP065406
Coordinates   2356963..2358540 (-) Length   525 a.a.
NCBI ID   WP_135148076.1    Uniprot ID   -
Organism   Diaphorobacter sp. JS3051     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2351963..2363540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K84_RS11265 (I3K84_11265) - 2352130..2352960 (-) 831 WP_135149295.1 YecA family protein -
  I3K84_RS11270 (I3K84_11270) - 2353442..2354743 (-) 1302 WP_011803815.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  I3K84_RS11275 (I3K84_11275) - 2354731..2355216 (-) 486 WP_196994519.1 putative toxin-antitoxin system toxin component, PIN family -
  I3K84_RS11280 (I3K84_11280) - 2355206..2356519 (-) 1314 WP_196994520.1 class I SAM-dependent RNA methyltransferase -
  I3K84_RS11285 (I3K84_11285) - 2356516..2356959 (-) 444 WP_172205570.1 thioesterase family protein -
  I3K84_RS11290 (I3K84_11290) rpoN/rpoN1 2356963..2358540 (-) 1578 WP_135148076.1 RNA polymerase factor sigma-54 Machinery gene
  I3K84_RS11295 (I3K84_11295) lptB 2358593..2359345 (-) 753 WP_088888621.1 LPS export ABC transporter ATP-binding protein -
  I3K84_RS11300 (I3K84_11300) lptA 2359369..2360028 (-) 660 WP_041838776.1 lipopolysaccharide transport periplasmic protein LptA -
  I3K84_RS11305 (I3K84_11305) - 2360202..2360852 (-) 651 WP_011803808.1 thiol:disulfide interchange protein DsbA/DsbL -
  I3K84_RS11310 (I3K84_11310) - 2360911..2361537 (-) 627 WP_196994521.1 SPOR domain-containing protein -
  I3K84_RS11315 (I3K84_11315) argS 2361550..2363253 (-) 1704 WP_196994522.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 57435.51 Da        Isoelectric Point: 4.5772

>NTDB_id=509212 I3K84_RS11290 WP_135148076.1 2356963..2358540(-) (rpoN/rpoN1) [Diaphorobacter sp. JS3051]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTLEEAPREEFGLAQADAPVSEQDREAEDAIY
SGAVSAGQESATSQNDAETSTAESTAEPADWEGDGSVDLAPDDSEWGGDAPARNGAGAGSDDEVDATELARSQESLTAFL
HRQALALRLSELDMAALRFLIESLNDDGYLDESLQDLAASLAGTEDPEQLDELVHRFTVALRLLQSLEPAGVGARGLAEC
LTLQLRAMDQDEEGDPDVIQAALAICGQPLDLLAKRDVRRLAQACGTSEERTRAAMALIARLEPRPGRRFADVDRNIIVP
DVIVKKTGRGGQQNFSVQLNPDVMPRLRVHDIYAGALRGGRGEGHQALQARLQEARWFIKNIQQRFDTILRVSRAIVERQ
KNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQFIAAE
NPHKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=509212 I3K84_RS11290 WP_135148076.1 2356963..2358540(-) (rpoN/rpoN1) [Diaphorobacter sp. JS3051]
ATGAAGCCCGGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACACCGCAGTTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCCCAGGAGGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAGCGCACGCTGGAAGAGG
CCCCGCGCGAGGAGTTCGGCCTGGCCCAGGCCGATGCGCCGGTGAGCGAGCAAGACCGCGAAGCCGAAGATGCTATTTAT
TCAGGAGCTGTCAGCGCAGGACAGGAAAGCGCTACAAGCCAAAATGATGCAGAAACCTCCACCGCCGAATCCACGGCCGA
ACCCGCGGACTGGGAAGGCGACGGCTCGGTAGACCTGGCGCCCGACGACAGCGAGTGGGGCGGCGACGCTCCGGCACGCA
ACGGTGCCGGCGCGGGGAGCGACGACGAGGTGGACGCCACCGAGCTGGCCCGCAGCCAGGAGTCGCTCACGGCCTTCCTG
CACCGCCAGGCGCTGGCGCTGCGCCTGTCCGAGCTGGACATGGCCGCGCTGCGCTTCCTCATCGAATCGCTGAACGACGA
CGGCTACCTGGACGAGTCGCTGCAGGACCTGGCCGCCAGCCTGGCGGGCACCGAAGACCCCGAGCAACTCGATGAATTGG
TGCACCGCTTCACAGTCGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGCGGGCGTGGGCGCGCGCGGCCTGGCCGAATGC
CTCACGCTGCAGCTGCGTGCGATGGACCAGGACGAAGAGGGCGACCCCGACGTGATCCAGGCCGCGCTGGCCATTTGCGG
CCAGCCGCTGGACCTGCTGGCCAAGCGCGACGTGCGCCGCCTGGCGCAGGCCTGCGGCACCAGCGAAGAGCGCACGCGTG
CCGCGATGGCCTTGATCGCACGGCTGGAGCCACGCCCGGGCAGGCGCTTTGCCGACGTGGACCGCAACATCATCGTGCCC
GACGTGATCGTCAAGAAAACTGGCCGCGGCGGACAGCAGAACTTCAGCGTGCAGCTCAACCCGGACGTGATGCCGCGTCT
GCGCGTGCACGACATCTACGCCGGTGCGTTGCGCGGCGGCCGTGGCGAAGGCCACCAGGCGCTGCAGGCACGGCTGCAGG
AGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGTTTTGACACCATCCTGCGCGTGTCGCGCGCCATCGTGGAGCGGCAG
AAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCTGGTGCTGCGCGACATTGCCGATGAACTGGGCCTGCACGA
GTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGCAAGGCACCTACGAGCTCAAGTATTTCTTCGGCT
CGGGGCTGGGCACCGAAACCGGCGGCAACGCCTCCAGCACGGCCGTGCGCGCGCTCATCAAGCAGTTCATCGCGGCCGAG
AACCCGCACAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATTGAATGTGCGCGCCGCACCGT
GGCCAAATACCGTGAGGCGCTCAAGATCGCCCCGGCCAACCTCCGCAAGGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(367-523)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.471

100

0.526