Detailed information NTG0509190

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: I5286_RS01820
• Genome accession: NZ_CP065403
• Coordinates: 430442..431602 (-)
• Length: 386 a.a.
• NCBI ID: WP_227243509.1
• Uniprot ID: -
• Organism: Paraburkholderia caribensis strain IAC-BECa88
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 425442..436602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5286_RS01800	leuA	425571..427229 (-)	1659	WP_176052258.1	2-isopropylmalate synthase	-
I5286_RS01805	ybiB	427743..428711 (-)	969	WP_107200746.1	DNA-binding protein YbiB	-
I5286_RS01810	-	428977..429675 (+)	699	WP_107200747.1	fumarylacetoacetate hydrolase family protein	-
I5286_RS01815	maiA	429710..430354 (+)	645	WP_227243507.1	maleylacetoacetate isomerase	-
I5286_RS01820	pilA	430442..431602 (-)	1161	WP_227243509.1	signal recognition particle-docking protein FtsY	Machinery gene
I5286_RS01825	rsmD	431904..432530 (+)	627	WP_227243511.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
I5286_RS01830	coaD	432648..433154 (+)	507	WP_054929647.1	pantetheine-phosphate adenylyltransferase	-
I5286_RS01835	-	433301..433558 (+)	258	WP_054929648.1	YfhL family 4Fe-4S dicluster ferredoxin	-
I5286_RS01840	hisC	433637..434716 (-)	1080	WP_062915102.1	histidinol-phosphate transaminase	-
I5286_RS01845	pth	434751..435353 (-)	603	WP_035986745.1	aminoacyl-tRNA hydrolase	-
I5286_RS01850	-	435474..436085 (-)	612	WP_054929714.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 386 a.a.
• Molecular weight: 41247.83 Da
• Isoelectric Point: 4.5843

>NTDB_id=509190 I5286_RS01820 WP_227243509.1 430442..431602(-) (pilA) [Paraburkholderia caribensis strain IAC-BECa88]
MFSFFKRFKGSKAPDDTPEAPHADSGVDVDMQDGAAPEAPAAARSQAVPDSADAPEFDPDYVPDAADFEDADDEAAEIIP
PPVPEAAEKRSWLTRLRSGLSKTSSSITGIFVGAKIDEDLYEELETALLMSDAGVDATEFLLEALREKVRAERLTDPQQV
KGALRTLLVELLKPLEKSLTLGHYQPTVMMIAGVNGAGKTTSIGKLAKHMQHFNQSVLLAAGDTFRAAAREQLAIWGQRN
NVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVVGKAMDGAPHEVLLVIDANTGQNAL
AQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFSDALLG

Nucleotide

• Length: 1161 bp

>NTDB_id=509190 I5286_RS01820 WP_227243509.1 430442..431602(-) (pilA) [Paraburkholderia caribensis strain IAC-BECa88]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCCAAGGCGCCCGACGACACGCCTGAAGCGCCGCACGCCGATTCCGGCGT
CGACGTCGACATGCAGGACGGGGCTGCGCCGGAAGCCCCCGCCGCCGCGCGTTCGCAAGCCGTCCCGGACTCGGCCGATG
CGCCTGAATTCGATCCCGATTACGTCCCCGACGCCGCCGACTTCGAAGATGCGGACGACGAAGCCGCGGAAATCATCCCG
CCGCCCGTGCCCGAAGCGGCCGAAAAGCGCTCGTGGCTCACGCGCCTTCGCAGCGGCCTGTCGAAGACCAGTTCGAGCAT
CACCGGGATCTTCGTCGGCGCGAAGATCGACGAAGACCTGTATGAAGAACTCGAAACGGCGCTGCTGATGTCCGACGCTG
GCGTCGACGCGACGGAGTTTCTGCTCGAAGCACTGCGCGAGAAAGTGCGCGCGGAGCGACTCACCGATCCGCAGCAGGTC
AAGGGCGCGCTACGCACGCTGCTGGTCGAGTTGCTCAAACCACTGGAAAAATCGCTGACGCTCGGCCATTACCAGCCGAC
CGTGATGATGATCGCGGGCGTCAACGGCGCAGGCAAAACGACGAGCATCGGCAAGCTCGCGAAGCATATGCAGCACTTCA
ACCAGTCGGTGCTGCTCGCCGCGGGTGACACGTTCCGCGCCGCCGCGCGCGAACAGCTCGCGATCTGGGGCCAGCGCAAC
AACGTGACGGTCGTTCAGCAGGAAAGCGGCGACCCCGCTGCGGTGATTTTCGATGCCGTCGGCGCCGCGCGCGCCCGCAA
GATCAACGTGGTGATGGCGGACACGGCCGGCCGTCTGCCGACGCAGCTTCATCTGATGGAAGAACTGCGCAAGGTGAAGC
GCGTAGTCGGCAAAGCGATGGACGGCGCGCCGCACGAGGTGCTGCTTGTCATTGACGCCAACACCGGTCAGAACGCACTC
GCCCAGGTGAAGGCTTTCGACGATGCGCTCGGTCTGACGGGCCTGATCGTGACGAAGCTCGACGGCACGGCGAAGGGCGG
CATTCTCGCGGCGATCGCGCGGCAACGCCCTGTGCCTGTGTACTTTATCGGCGTCGGTGAAAAGGTCGAAGATCTTCAGC
CGTTCAGCGCCGAAGAGTTTTCGGATGCGCTGCTGGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (186-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (105-165)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.404	100	0.565