Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   I5Z97_RS03270 Genome accession   NZ_CP065386
Coordinates   642288..642629 (+) Length   113 a.a.
NCBI ID   WP_231401392.1    Uniprot ID   -
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637288..647629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS03250 (I5Z97_03250) - 637833..640388 (-) 2556 WP_021119495.1 penicillin-binding protein 1A -
  I5Z97_RS03255 (I5Z97_03255) comA 640542..641219 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  I5Z97_RS03260 (I5Z97_03260) comB 641195..641716 (+) 522 WP_062923926.1 hypothetical protein Machinery gene
  I5Z97_RS03265 (I5Z97_03265) comC 641713..642243 (+) 531 WP_196980303.1 ATPase Machinery gene
  I5Z97_RS03270 (I5Z97_03270) comD 642288..642629 (+) 342 WP_231401392.1 hypothetical protein Machinery gene
  I5Z97_RS03275 (I5Z97_03275) comE 642639..643901 (+) 1263 WP_160434722.1 type IV pilus secretin PilQ Machinery gene
  I5Z97_RS03280 (I5Z97_03280) nusB 643980..644393 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  I5Z97_RS03285 (I5Z97_03285) thiL 644402..645370 (+) 969 WP_196980305.1 thiamine-phosphate kinase -
  I5Z97_RS03290 (I5Z97_03290) - 645373..645843 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -
  I5Z97_RS03295 (I5Z97_03295) - 645845..646474 (+) 630 WP_015940164.1 LysE family transporter -
  I5Z97_RS03300 (I5Z97_03300) trxA 646771..647085 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=509126 I5Z97_RS03270 WP_231401392.1 642288..642629(+) (comD) [Glaesserella parasuis strain LHDR_HPS_1_2]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPNDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=509126 I5Z97_RS03270 WP_231401392.1 642288..642629(+) (comD) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

96.46

100

0.965