Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I5Z97_RS03255 Genome accession   NZ_CP065386
Coordinates   640542..641219 (+) Length   225 a.a.
NCBI ID   WP_021113429.1    Uniprot ID   A0A836MB36
Organism   Glaesserella parasuis strain LHDR_HPS_1_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 635542..646219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Z97_RS03240 (I5Z97_03240) aroB 635979..637067 (-) 1089 WP_021117939.1 3-dehydroquinate synthase -
  I5Z97_RS03245 (I5Z97_03245) aroK 637082..637603 (-) 522 WP_015940157.1 shikimate kinase AroK -
  I5Z97_RS03250 (I5Z97_03250) - 637833..640388 (-) 2556 WP_021119495.1 penicillin-binding protein 1A -
  I5Z97_RS03255 (I5Z97_03255) comA 640542..641219 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  I5Z97_RS03260 (I5Z97_03260) comB 641195..641716 (+) 522 WP_062923926.1 hypothetical protein Machinery gene
  I5Z97_RS03265 (I5Z97_03265) comC 641713..642243 (+) 531 WP_196980303.1 ATPase Machinery gene
  I5Z97_RS03270 (I5Z97_03270) comD 642288..642629 (+) 342 WP_231401392.1 hypothetical protein Machinery gene
  I5Z97_RS03275 (I5Z97_03275) comE 642639..643901 (+) 1263 WP_160434722.1 type IV pilus secretin PilQ Machinery gene
  I5Z97_RS03280 (I5Z97_03280) nusB 643980..644393 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  I5Z97_RS03285 (I5Z97_03285) thiL 644402..645370 (+) 969 WP_196980305.1 thiamine-phosphate kinase -
  I5Z97_RS03290 (I5Z97_03290) - 645373..645843 (+) 471 WP_021117942.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26255.27 Da        Isoelectric Point: 7.3026

>NTDB_id=509123 I5Z97_RS03255 WP_021113429.1 640542..641219(+) (comA) [Glaesserella parasuis strain LHDR_HPS_1_2]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKMTETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHLPHFYPYLIALGASLWNGKASI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=509123 I5Z97_RS03255 WP_021113429.1 640542..641219(+) (comA) [Glaesserella parasuis strain LHDR_HPS_1_2]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATCTGGCGAAAAACCTTAATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCCCTAAGAAAAAGCAACAGCTTTG
ACCCAACGGCTATTTTAGATTGCGAACTCTACTGCCTGCTACGAGCGGTAGGATTTCTGACAAAAATGACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACATCTTCCCCACTTTTATCCTTATCTCATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGCATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MB36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

100

100

1