Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SAIN_RS04860 Genome accession   NC_022244
Coordinates   988526..989596 (+) Length   356 a.a.
NCBI ID   WP_021001685.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 983526..994596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS04835 (SAIN_0941) guaA 983690..985249 (-) 1560 WP_021001682.1 glutamine-hydrolyzing GMP synthase -
  SAIN_RS04840 (SAIN_0942) - 985391..986089 (+) 699 WP_021001683.1 GntR family transcriptional regulator -
  SAIN_RS04845 (SAIN_0943) - 986205..986537 (+) 333 WP_003034487.1 putative DNA-binding protein -
  SAIN_RS04850 (SAIN_0944) ffh 986610..988160 (+) 1551 WP_021001684.1 signal recognition particle protein -
  SAIN_RS04860 (SAIN_0945) xerS 988526..989596 (+) 1071 WP_021001685.1 tyrosine recombinase XerS Machinery gene
  SAIN_RS04865 (SAIN_0946) ucpA 989658..990455 (-) 798 WP_021001686.1 SDR family oxidoreductase UcpA -
  SAIN_RS04870 (SAIN_0947) - 990807..991796 (-) 990 WP_021001687.1 lipoate--protein ligase -
  SAIN_RS04875 (SAIN_0948) lpdA 991811..993514 (-) 1704 WP_021001688.1 dihydrolipoyl dehydrogenase -
  SAIN_RS04880 (SAIN_0949) - 993544..994587 (-) 1044 WP_041784009.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41305.34 Da        Isoelectric Point: 9.3193

>NTDB_id=50909 SAIN_RS04860 WP_021001685.1 988526..989596(+) (xerS) [Streptococcus anginosus C1051]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIADGSQIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFEKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=50909 SAIN_RS04860 WP_021001685.1 988526..989596(+) (xerS) [Streptococcus anginosus C1051]
ATGAAACGTGAAATACTGTTAGAAAGAATTGAAAAACTAAAAGCTATCATGCCTTGGTATGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGCTGATGGGTCACAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTGAATGCCAATACTACACAGAACGGGGTATCGCAAACCACCATTAA
TCGCACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAGCCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAAACTTTAGCTGCGCGCGCTGAAAACATCAAACAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGAAAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCGTCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTCAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTACCTGGAGGTTCGCTCTAAACGTTATAAAGCTGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGATCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(187-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885

Multiple sequence alignment