Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST1A_RS02260 Genome accession   NZ_CP065384
Coordinates   415544..415987 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 1A     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410544..420987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST1A_RS02240 (ST1A_02240) - 411065..411817 (-) 753 WP_011680801.1 NUDIX hydrolase -
  ST1A_RS02245 (ST1A_02245) - 411881..412988 (-) 1108 Protein_381 AAA family ATPase -
  ST1A_RS02250 (ST1A_02250) gdhA 413332..414684 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST1A_RS02255 (ST1A_02255) - 414943..415353 (+) 411 WP_011680804.1 peptide deformylase -
  ST1A_RS02260 (ST1A_02260) rcrR 415544..415987 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  ST1A_RS02265 (ST1A_02265) rcrP 415991..417805 (+) 1815 WP_011680805.1 ABC transporter ATP-binding protein Regulator
  ST1A_RS02270 (ST1A_02270) rcrQ 417795..419573 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  ST1A_RS02275 (ST1A_02275) - 419729..420100 (+) 372 WP_224103209.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=509078 ST1A_RS02260 WP_002945408.1 415544..415987(+) (rcrR) [Streptococcus thermophilus strain 1A]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=509078 ST1A_RS02260 WP_002945408.1 415544..415987(+) (rcrR) [Streptococcus thermophilus strain 1A]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537