Detailed information NTG0050906

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SAIN_RS04665
• Genome accession: NC_022244
• Coordinates: 949848..950960 (+)
• Length: 370 a.a.
• NCBI ID: WP_003024631.1
• Uniprot ID: A0A0P0N8U3
• Organism: Streptococcus anginosus C1051
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 944848..955960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAIN_RS04645 (SAIN_0903)	-	946711..947049 (+)	339	WP_003024641.1	ATP cone domain-containing protein	-
SAIN_RS04650 (SAIN_0904)	rpsU	947246..947422 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
SAIN_RS04655 (SAIN_0905)	mscL	947535..947915 (-)	381	WP_003024637.1	large conductance mechanosensitive channel protein MscL	-
SAIN_RS04660 (SAIN_0906)	dnaG	948070..949845 (+)	1776	WP_282187182.1	DNA primase	-
SAIN_RS04665 (SAIN_0907)	rpoS	949848..950960 (+)	1113	WP_003024631.1	RNA polymerase sigma factor RpoD	Regulator
SAIN_RS04670 (SAIN_0908)	-	950979..951308 (+)	330	WP_003024629.1	metal-sulfur cluster assembly factor	-
SAIN_RS04675 (SAIN_0909)	brnQ	951456..952784 (+)	1329	WP_021001660.1	branched-chain amino acid transport system II carrier protein	-
SAIN_RS04680 (SAIN_0910)	ccdA2	952922..953632 (+)	711	WP_003024626.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SAIN_RS04685 (SAIN_0911)	-	953646..954209 (+)	564	WP_003024623.1	redoxin domain-containing protein	-
SAIN_RS04690 (SAIN_0912)	msrB	954222..955340 (+)	1119	WP_041784110.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42439.09 Da
• Isoelectric Point: 4.4643

>NTDB_id=50906 SAIN_RS04665 WP_003024631.1 949848..950960(+) (rpoS) [Streptococcus anginosus C1051]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDRLVIPFTLEADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=50906 SAIN_RS04665 WP_003024631.1 949848..950960(+) (rpoS) [Streptococcus anginosus C1051]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAAATCAATGATCGGCTAGTCATTCCATTTACTTTGGAAGCTGATGGCATTGAAGATCTTCTTCAAC
GGATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTTTTAAATACAGAGGAAGAAGAA
GCTGAATTAACAGATGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTGAACGACCCTGTCCGTATGTATTTAAAGGAAAT
TGGTGTTGTTCCGTTATTGACCAATGAAGAAGAGCAAGAATTAGCTGTTCTTGTGGAGCAAGGCGACTTAGAAGCGAAAC
AACGTTTGGCAGAAGCTAATTTGCGGTTGGTTGTCTCTATTGCTAAGCGCTATGTTGGACGCGGCATGCAGTTTCTTGAC
TTGATTCAAGAAGGCAATATGGGATTGATGAAAGCCGTTGACAAGTTTGACTATACCAAAGGTTTCAAATTTTCGACCTA
TGCCACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCTGACCAAGCGCGTACGATTCGGATTCCGGTTCACATGG
TTGAGACAATCAATAAATTAGTGCGGGAGCAACGAAATCTTTTGCAAGAATTGGGACAAGATCCAACGCCAGAACAAATT
GCTGAGCGCATGGATATGACACCAGATAAAGTTCGTGAAATTTTGAAGATTGCCCAGGAGCCGGTCTCTCTTGAAACTCC
AATTGGAGAAGAAGATGATAGTCATCTTGGCGATTTCATTGAGGATGAAGTGATTGAAAATCCAGTTGATTACACAACAC
GTATTGTCCTACGTGAGCAATTAGACGAGGTTCTTGATACATTAACAGACCGTGAAGAAAATGTACTACGTTTGCGTTTC
GGTCTAGATGATGGTAAAATGCGTACGCTGGAAGATGTTGGAAAAGTCTTTAACGTGACTCGTGAACGGATTCGACAAAT
TGAGGCCAAAGCCCTACGCAAATTGCGTCATCCAAGTCGTAGCAAGCCACTTCGTGACTTTATTGAAGATTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

3D structure

• AlphaFold DB: A0A0P0N8U3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37