Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I3251_RS11325 Genome accession   NZ_CP065374
Coordinates   2377239..2377796 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2372239..2382796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3251_RS11305 (I3251_11305) pilR 2373515..2374852 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  I3251_RS11310 (I3251_11310) thiO 2374898..2375992 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  I3251_RS11315 (I3251_11315) - 2376127..2376636 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  I3251_RS11320 (I3251_11320) - 2376742..2377248 (+) 507 WP_033937816.1 Tfp pilus assembly protein FimT/FimU -
  I3251_RS11325 (I3251_11325) pilV 2377239..2377796 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  I3251_RS11330 (I3251_11330) pilW 2377793..2378617 (+) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  I3251_RS11335 (I3251_11335) pilX 2378614..2379201 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  I3251_RS11340 (I3251_11340) pilY1 2379213..2382704 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=508931 I3251_RS11325 WP_003119423.1 2377239..2377796(+) (pilV) [Pseudomonas aeruginosa strain PAG7]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=508931 I3251_RS11325 WP_003119423.1 2377239..2377796(+) (pilV) [Pseudomonas aeruginosa strain PAG7]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995