Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | I3251_RS10700 | Genome accession | NZ_CP065374 |
| Coordinates | 2265036..2265908 (+) | Length | 290 a.a. |
| NCBI ID | WP_009875878.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PAG7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2260036..2270908
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3251_RS10675 (I3251_10675) | nadC | 2260378..2261226 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| I3251_RS10685 (I3251_10685) | pilA | 2261424..2261876 (-) | 453 | WP_023518088.1 | pilin | Machinery gene |
| I3251_RS10690 (I3251_10690) | pilB | 2262108..2263808 (+) | 1701 | WP_021264132.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| I3251_RS10695 (I3251_10695) | pilC | 2263812..2265032 (+) | 1221 | WP_023101565.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| I3251_RS10700 (I3251_10700) | pilD | 2265036..2265908 (+) | 873 | WP_009875878.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| I3251_RS10705 (I3251_10705) | coaE | 2265905..2266516 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| I3251_RS10710 (I3251_10710) | yacG | 2266513..2266713 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| I3251_RS10715 (I3251_10715) | - | 2266750..2266959 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| I3251_RS10720 (I3251_10720) | - | 2267065..2267754 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| I3251_RS10725 (I3251_10725) | - | 2267751..2268221 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| I3251_RS10730 (I3251_10730) | - | 2268218..2268643 (-) | 426 | WP_105248386.1 | GNAT family N-acetyltransferase | - |
| I3251_RS10735 (I3251_10735) | - | 2268776..2269405 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| I3251_RS10740 (I3251_10740) | - | 2269402..2269851 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| I3251_RS10745 (I3251_10745) | - | 2269877..2270047 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31811.84 Da Isoelectric Point: 7.7068
>NTDB_id=508927 I3251_RS10700 WP_009875878.1 2265036..2265908(+) (pilD) [Pseudomonas aeruginosa strain PAG7]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=508927 I3251_RS10700 WP_009875878.1 2265036..2265908(+) (pilD) [Pseudomonas aeruginosa strain PAG7]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |