Detailed information NTG0508900

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I5M77_RS17065
• Genome accession: NZ_CP065369
• Coordinates: 3572361..3573350 (+)
• Length: 329 a.a.
• NCBI ID: WP_025792827.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20-082A3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3567361..3578350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5M77_RS17030 (I5M77_17030)	ftsB	3567369..3567650 (+)	282	WP_005455577.1	cell division protein FtsB	-
I5M77_RS17035 (I5M77_17035)	ispD	3567652..3568356 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I5M77_RS17040 (I5M77_17040)	ispF	3568374..3568850 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I5M77_RS17045 (I5M77_17045)	truD	3568897..3569940 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
I5M77_RS17050 (I5M77_17050)	surE	3569940..3570716 (+)	777	WP_025792825.1	5'/3'-nucleotidase SurE	-
I5M77_RS17055 (I5M77_17055)	-	3570716..3571342 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I5M77_RS17060 (I5M77_17060)	-	3571357..3572280 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
I5M77_RS17065 (I5M77_17065)	rpoS	3572361..3573350 (+)	990	WP_025792827.1	RNA polymerase sigma factor RpoS	Regulator
I5M77_RS17070 (I5M77_17070)	mutS	3573429..3575990 (-)	2562	WP_025792829.1	DNA mismatch repair protein MutS	-
I5M77_RS17075 (I5M77_17075)	pncC	3576075..3576557 (+)	483	WP_025554256.1	nicotinamide-nucleotide amidase	-
I5M77_RS17080 (I5M77_17080)	recA	3576758..3577801 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6096

>NTDB_id=508900 I5M77_RS17065 WP_025792827.1 3572361..3573350(+) (rpoS) [Vibrio parahaemolyticus strain 20-082A3]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLVHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=508900 I5M77_RS17065 WP_025792827.1 3572361..3573350(+) (rpoS) [Vibrio parahaemolyticus strain 20-082A3]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTGCTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGGTCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGGTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851