Detailed information NTG0508881

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: I5M77_RS12400
• Genome accession: NZ_CP065369
• Coordinates: 2602174..2603181 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 20-082A3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2597174..2608181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5M77_RS12380 (I5M77_12380)	rplC	2597708..2598337 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
I5M77_RS12385 (I5M77_12385)	rpsJ	2598352..2598663 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
I5M77_RS12390 (I5M77_12390)	rpmE	2599121..2599342 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
I5M77_RS12395 (I5M77_12395)	priA	2599637..2601841 (+)	2205	WP_029824531.1	primosomal protein N'	-
I5M77_RS12400 (I5M77_12400)	cytR	2602174..2603181 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
I5M77_RS12405 (I5M77_12405)	ftsN	2603358..2603903 (+)	546	WP_005481405.1	cell division protein FtsN	-
I5M77_RS12410 (I5M77_12410)	hslV	2604068..2604619 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
I5M77_RS12415 (I5M77_12415)	hslU	2604643..2605974 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
I5M77_RS12420 (I5M77_12420)	-	2606398..2606622 (-)	225	WP_005489715.1	hypothetical protein	-
I5M77_RS12425 (I5M77_12425)	-	2606782..2606931 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
I5M77_RS12430 (I5M77_12430)	radC	2607102..2607575 (+)	474	WP_025792561.1	RadC family protein	-
I5M77_RS12435 (I5M77_12435)	-	2607572..2608003 (+)	432	WP_017633432.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=508881 I5M77_RS12400 WP_005481416.1 2602174..2603181(+) (cytR) [Vibrio parahaemolyticus strain 20-082A3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=508881 I5M77_RS12400 WP_005481416.1 2602174..2603181(+) (cytR) [Vibrio parahaemolyticus strain 20-082A3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904