Detailed information NTG0050887

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DGO_RS10915
• Genome accession: NC_017790
• Coordinates: 2302857..2304077 (+)
• Length: 406 a.a.
• NCBI ID: WP_014685578.1
• Uniprot ID: H8GYP8
• Organism: Deinococcus gobiensis I-0
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	2304294..2305355	2302857..2304077	flank	217

Gene organization within MGE regions

Location: 2302857..2305355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DGO_RS10915 (DGo_CA2168)	pilC	2302857..2304077 (+)	1221	WP_014685578.1	type II secretion system F family protein	Machinery gene
DGO_RS10920 (DGo_CA2169)	-	2304294..2305355 (+)	1062	WP_014685579.1	IS4 family transposase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44214.10 Da
• Isoelectric Point: 9.5605

>NTDB_id=50887 DGO_RS10915 WP_014685578.1 2302857..2304077(+) (pilC) [Deinococcus gobiensis I-0]
MPVFEYRVRDMSGKVLKSQMEAETIGQVRDALRAKNLMIVEVKPPRTGMNADIKIPGLSDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLSILQKQIEHKGFQEIMRKVRGEVEAGTPFSEAIAQYPKVFNRLFVNLVRAGETSGTLDTVLERIAAFQEKQ
LALNGKLKSALTYPMVVLVFALLITYFLLTTIVPQFAGILTQLNAPLPFITRLLMATSDFLKHSTLFIVVSIAIAVFAYR
WYYNKPQGRKVVDTIKLKIPVFGGLIQKTALSSFARTFGLLIGSGVNIIESLEITRGTANNAVVEESIENAKNVVTVGEQ
MSSSLATSPVFPPMVVSMIAIGEETGALDTMLGKIGDFYDREVDEAVDSLTAALEPIMIVFLGGIVGVIVAGMFLPMFSI
IGALSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=50887 DGO_RS10915 WP_014685578.1 2302857..2304077(+) (pilC) [Deinococcus gobiensis I-0]
ATGCCGGTCTTCGAATATCGCGTCCGGGACATGAGCGGCAAGGTCCTGAAATCCCAGATGGAGGCCGAGACCATAGGCCA
GGTCCGCGACGCCCTGCGCGCCAAGAACTTGATGATCGTCGAGGTCAAGCCGCCGCGCACCGGCATGAACGCCGACATCA
AGATTCCGGGGCTGTCCGACCGTCCGCCCGGGCTCAAGCAGGTCGCCGTATTCAGCAAACAGCTCGCCACCCTCATCAAC
GCCGGGGTTCCGCTCGTGCAGTCGCTGAGCATCCTGCAAAAGCAGATCGAGCACAAGGGCTTTCAGGAGATCATGCGCAA
GGTCCGGGGGGAGGTTGAAGCAGGCACCCCGTTCAGCGAGGCCATCGCGCAGTACCCCAAGGTGTTCAATCGCCTCTTCG
TCAACCTTGTGCGCGCCGGTGAGACGAGCGGCACATTGGATACGGTCCTAGAGCGTATTGCTGCCTTCCAGGAAAAGCAA
CTTGCGCTGAACGGCAAACTCAAAAGCGCCCTCACTTACCCAATGGTAGTCTTGGTTTTCGCCTTGCTTATTACTTACTT
TCTGCTCACGACCATCGTGCCGCAGTTCGCCGGCATTCTGACACAGCTCAATGCGCCGCTGCCCTTCATCACACGGCTGC
TGATGGCCACCTCGGATTTCCTTAAGCACTCTACCCTCTTTATCGTAGTTAGCATCGCCATTGCTGTCTTTGCCTATCGC
TGGTACTACAATAAGCCACAGGGGCGTAAAGTTGTCGATACGATCAAGCTCAAAATTCCGGTCTTCGGAGGTCTGATCCA
GAAGACTGCTCTTAGCTCCTTCGCACGGACTTTCGGCCTACTGATTGGCAGCGGCGTGAACATCATCGAAAGCTTGGAGA
TCACGCGCGGCACCGCCAACAACGCCGTGGTCGAGGAGTCCATCGAAAACGCCAAGAACGTGGTCACGGTCGGCGAGCAG
ATGAGCTCGAGCCTGGCGACCAGCCCGGTCTTTCCGCCCATGGTCGTCTCGATGATCGCCATCGGGGAGGAGACGGGGGC
GCTCGACACCATGCTGGGCAAGATCGGCGATTTCTACGACCGCGAGGTGGACGAGGCGGTGGACAGCCTCACGGCGGCGC
TGGAACCCATCATGATCGTGTTCCTGGGCGGCATCGTTGGCGTAATCGTCGCGGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGGGCACTCAGCCAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

3D structure

• AlphaFold DB: H8GYP8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	56.404	100	0.564