Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DGO_RS10470 Genome accession   NC_017790
Coordinates   2209899..2210513 (+) Length   204 a.a.
NCBI ID   WP_014685488.1    Uniprot ID   H8GY77
Organism   Deinococcus gobiensis I-0     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204899..2215513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS10445 (DGo_CA2073) - 2206058..2206303 (-) 246 WP_014685483.1 glutaredoxin domain-containing protein -
  DGO_RS10450 (DGo_CA2074) infC 2206444..2207043 (-) 600 WP_014685484.1 translation initiation factor IF-3 -
  DGO_RS10455 (DGo_CA2075) - 2207312..2207995 (+) 684 WP_043802009.1 NUDIX hydrolase -
  DGO_RS21130 (DGo_CA2076) - 2208006..2209259 (-) 1254 WP_169331008.1 peroxiredoxin-like family protein -
  DGO_RS10465 (DGo_CA2077) - 2209583..2209873 (+) 291 WP_043802010.1 YbaB/EbfC family nucleoid-associated protein -
  DGO_RS10470 (DGo_CA2078) recR 2209899..2210513 (+) 615 WP_014685488.1 recombination mediator RecR Machinery gene
  DGO_RS10475 (DGo_CA2079) - 2210747..2211355 (+) 609 WP_043802013.1 GNAT family N-acetyltransferase -
  DGO_RS10480 (DGo_CA2080) - 2211421..2211867 (+) 447 WP_043802015.1 hypothetical protein -
  DGO_RS10485 (DGo_CA2081) - 2211918..2212691 (-) 774 WP_014685491.1 hypothetical protein -
  DGO_RS10490 (DGo_CA2082) tdh 2212722..2213789 (-) 1068 WP_014685492.1 L-threonine 3-dehydrogenase -
  DGO_RS24645 (DGo_CA2083) - 2214001..2214135 (+) 135 WP_014685493.1 hypothetical protein -
  DGO_RS10495 (DGo_CA2084) - 2214187..2214603 (+) 417 WP_014685494.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21983.35 Da        Isoelectric Point: 6.3363

>NTDB_id=50886 DGO_RS10470 WP_014685488.1 2209899..2210513(+) (recR) [Deinococcus gobiensis I-0]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLSAKRDLHTCPICFNITDAETCDVCSDPSRDQN
LIAVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPEKLHIRPLLPRVREGMEVILATGTTVEGDATALYLQRLLEP
LGAAVSRIAYGLPVGGALEYADEVTLGRALTGRQRVGGPVAGKG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=50886 DGO_RS10470 WP_014685488.1 2209899..2210513(+) (recR) [Deinococcus gobiensis I-0]
ATGAAATACCCCCCCTCGCTGGTCGCGCTGATCCGTGAACTCTCGCGCCTGCCGGGCATCGGCCCCAAGAGCGCGCAGCG
CCTGGCCTTCCACCTGTTCGAGCAGCCGCGCGAGGACATCGAGCGCCTCGCCTCGGCGCTGCTGTCGGCCAAGCGCGACC
TGCACACCTGCCCTATCTGTTTCAACATCACCGACGCCGAGACCTGCGACGTGTGCAGCGACCCCTCGCGCGACCAGAAC
CTGATCGCGGTGGTCGAGGAACCCGGCGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGGGGGCTGTACCACGTGCT
GCACGGCGTCCTGAGCCCGATGAACGGGGTCGGTCCCGAGAAGCTGCACATCCGGCCCCTGCTGCCACGCGTGCGTGAGG
GCATGGAGGTCATCCTGGCGACCGGCACCACGGTCGAGGGCGACGCCACTGCCCTGTACCTGCAACGGCTGCTCGAGCCG
CTGGGCGCGGCCGTGAGCCGCATCGCCTACGGCCTGCCGGTGGGCGGCGCGCTGGAATACGCCGACGAGGTCACGCTGGG
CCGCGCCCTGACCGGCCGCCAGCGGGTCGGTGGCCCGGTGGCCGGCAAGGGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(82-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8GY77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.95

97.549

0.877

Multiple sequence alignment