Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   DGO_RS01765 Genome accession   NC_017790
Coordinates   364436..365020 (+) Length   194 a.a.
NCBI ID   WP_014683760.1    Uniprot ID   -
Organism   Deinococcus gobiensis I-0     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359436..370020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGO_RS01740 (DGo_CA0345) - 359934..360716 (-) 783 WP_014683755.1 APH(3') family aminoglycoside O-phosphotransferase -
  DGO_RS01745 (DGo_CA0346) - 360776..361465 (+) 690 WP_043800572.1 YqhA family protein -
  DGO_RS01750 (DGo_CA0347) - 361538..362425 (+) 888 WP_014683757.1 hypothetical protein -
  DGO_RS01755 (DGo_CA0348) - 362422..362796 (+) 375 WP_043800575.1 hypothetical protein -
  DGO_RS01760 (DGo_CA0349) - 362955..364151 (-) 1197 WP_050920642.1 branched-chain amino acid ABC transporter substrate-binding protein -
  DGO_RS01765 (DGo_CA0350) ddrB 364436..365020 (+) 585 WP_014683760.1 single-stranded DNA-binding protein Machinery gene
  DGO_RS01770 (DGo_CA0351) - 365118..365573 (-) 456 WP_050920643.1 hypothetical protein -
  DGO_RS01775 (DGo_CA0352) - 365636..365815 (+) 180 WP_043800578.1 hypothetical protein -
  DGO_RS01780 (DGo_CA0353) - 366163..367344 (+) 1182 WP_014683763.1 PfkB family carbohydrate kinase -
  DGO_RS01785 (DGo_CA0354) - 367341..368279 (+) 939 WP_043800582.1 pseudouridine-5'-phosphate glycosidase -
  DGO_RS01790 (DGo_CA0355) - 368444..369775 (-) 1332 WP_014683765.1 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21305.89 Da        Isoelectric Point: 8.4311

>NTDB_id=50879 DGO_RS01765 WP_014683760.1 364436..365020(+) (ddrB) [Deinococcus gobiensis I-0]
MLRIEFVTDLGARVSVEVESADKLLEVQRQYGRLGWTSGEVPQGGYLFPLDNEQDFDWSLIGARKFTNNEGEDMVMHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKNTDPEHVREKADGEFEYVTLAIFRGGKRQERFAQPAGRSQPAQGSRPAAPAG
NGPRPQAAPAGRPAPVAARPAPVAAAVADEEPPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=50879 DGO_RS01765 WP_014683760.1 364436..365020(+) (ddrB) [Deinococcus gobiensis I-0]
ATGCTGCGTATTGAATTTGTGACGGATCTGGGGGCACGGGTCAGTGTCGAGGTGGAGAGCGCCGATAAGCTGCTTGAGGT
ACAGCGCCAGTACGGTCGCCTGGGCTGGACCAGCGGCGAGGTGCCGCAGGGCGGCTACCTGTTCCCGCTGGACAACGAGC
AGGATTTCGACTGGTCGCTGATCGGGGCCAGGAAGTTCACCAACAACGAGGGCGAGGACATGGTCATGCACCGGGGCCAC
GCCTACCGCCGCCGCGAGCTGGAGGCCGTGGACAGCCGCAAGCTCAAGCTGCCGGCCGCCATCAAGTACAGCCGGGGGGC
CAAGAACACCGACCCCGAGCATGTGCGTGAAAAGGCCGACGGCGAGTTCGAGTACGTCACGCTGGCGATCTTCCGGGGGG
GCAAGCGCCAGGAGCGTTTCGCCCAGCCGGCGGGCCGTTCCCAGCCGGCGCAGGGAAGCCGGCCCGCCGCGCCGGCCGGC
AACGGACCCCGGCCTCAGGCCGCGCCGGCCGGTCGTCCCGCGCCCGTGGCGGCCCGCCCGGCTCCGGTCGCGGCGGCAGT
GGCCGACGAGGAACCGCCCTTCTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

71.765

87.629

0.629

Multiple sequence alignment