Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I0292_RS11760 Genome accession   NZ_CP065335
Coordinates   2210870..2211292 (-) Length   140 a.a.
NCBI ID   WP_047750471.1    Uniprot ID   -
Organism   Priestia megaterium strain Y11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2205870..2216292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0292_RS11730 (I0292_11655) fsa 2206053..2206721 (+) 669 WP_323873993.1 fructose-6-phosphate aldolase -
  I0292_RS11735 (I0292_11660) - 2206800..2207285 (+) 486 WP_323873994.1 hypothetical protein -
  I0292_RS11740 (I0292_11665) - 2207617..2208897 (+) 1281 WP_260506391.1 glycosyltransferase -
  I0292_RS11745 (I0292_11670) - 2208920..2209576 (+) 657 WP_047751820.1 TetR/AcrR family transcriptional regulator -
  I0292_RS11750 (I0292_11675) - 2209729..2210322 (+) 594 WP_033580502.1 hypothetical protein -
  I0292_RS11755 (I0292_11680) - 2210362..2210706 (-) 345 WP_028414497.1 DUF1516 family protein -
  I0292_RS11760 (I0292_11685) nucA/comI 2210870..2211292 (-) 423 WP_047750471.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I0292_RS11765 (I0292_11690) - 2211433..2211897 (-) 465 WP_047750472.1 FixH family protein -
  I0292_RS11770 (I0292_11695) - 2211927..2213306 (-) 1380 WP_221817587.1 PepSY-associated TM helix domain-containing protein -
  I0292_RS11775 (I0292_11700) - 2213441..2214082 (-) 642 WP_033580507.1 response regulator -
  I0292_RS11780 (I0292_11705) - 2214083..2214904 (-) 822 WP_224980275.1 sensor histidine kinase -
  I0292_RS11785 (I0292_11710) - 2215107..2215940 (+) 834 WP_323873995.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15299.15 Da        Isoelectric Point: 4.4990

>NTDB_id=508544 I0292_RS11760 WP_047750471.1 2210870..2211292(-) (nucA/comI) [Priestia megaterium strain Y11]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIATKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=508544 I0292_RS11760 WP_047750471.1 2210870..2211292(-) (nucA/comI) [Priestia megaterium strain Y11]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATCCCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTGCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGCGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5