Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SAIN_RS00250 Genome accession   NC_022244
Coordinates   39619..41553 (-) Length   644 a.a.
NCBI ID   WP_021001150.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 34619..46553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS00230 (SAIN_0047) purF 34691..36154 (+) 1464 WP_021001146.1 amidophosphoribosyltransferase -
  SAIN_RS00235 (SAIN_0048) purM 36196..37218 (+) 1023 WP_171004455.1 phosphoribosylformylglycinamidine cyclo-ligase -
  SAIN_RS00240 (SAIN_0049) purN 37218..37772 (+) 555 WP_021001148.1 phosphoribosylglycinamide formyltransferase -
  SAIN_RS00245 (SAIN_0050) purH 38013..39560 (+) 1548 WP_021001149.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SAIN_RS00250 (SAIN_0051) lytF 39619..41553 (-) 1935 WP_021001150.1 GBS Bsp-like repeat-containing protein Regulator
  SAIN_RS00255 (SAIN_0052) purD 41748..43013 (+) 1266 WP_021001151.1 phosphoribosylamine--glycine ligase -
  SAIN_RS00260 (SAIN_0053) - 43003..43437 (+) 435 WP_003032062.1 DUF523 domain-containing protein -
  SAIN_RS00265 (SAIN_0054) purE 43675..44163 (+) 489 WP_021001152.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SAIN_RS00270 (SAIN_0055) purK 44150..45238 (+) 1089 WP_021001153.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SAIN_RS00275 (SAIN_0056) - 45250..45486 (+) 237 WP_021001154.1 hypothetical protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 71116.92 Da        Isoelectric Point: 8.7137

>NTDB_id=50843 SAIN_RS00250 WP_021001150.1 39619..41553(-) (lytF) [Streptococcus anginosus C1051]
MKKYSQLFLLSSTILGVFSAQLTAQASEADNAQKSSNPAILASNITVNVSGNTASINYTRSQTQVPYTIYHAVWSDENGQ
DDIKWYSAPQTPTTAIDLRQHTGYGTFHVHTYININGKMVGLNGTTFKVEKPASGTVSTTVLGKTAQISFTRNKDQTNAN
ILHAVWSDEKGQDDIKWYTAGQDTTEIDLSNHKGYGVYHVHTYESKNGKMIGLNGTTFNLEKPNPTIQTSFPEPGIMDIQ
IKNVPKTIYKLTVPAWSDRNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGITAQVDA
DKLPSEEEQKPFFSVENINQEQGTYTVKVSETSKSKPIQSVRVPIWSTSNQSNIKWYAATNHGDGTFTTSFDIRNYQVLS
GTYTNHIYVKYKDGSEHSYATDSVAMSAEKIKTKVSVAKRSTYLYEVTVTDAYGDGKISLPTWSEVNGQDDIQWYTATKA
GNGIYKFTIDTQKHTGSGLFHTHVYRNLNGQMIGLTGTSYQVEKPAISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWG
NGGDWAASARRAGFKTGTTPQVGAIICWTDGGYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGAVSY
IYPK

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=50843 SAIN_RS00250 WP_021001150.1 39619..41553(-) (lytF) [Streptococcus anginosus C1051]
ATGAAGAAATACAGTCAATTATTTTTACTATCTAGCACTATTTTGGGCGTTTTTTCTGCTCAACTAACTGCTCAAGCCTC
GGAAGCAGATAATGCTCAAAAAAGCTCAAATCCAGCAATTCTTGCTAGCAACATTACCGTCAATGTTTCTGGAAATACAG
CTTCTATTAACTACACACGCTCACAGACACAAGTTCCTTACACCATTTACCACGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACATTAAGTGGTATTCCGCGCCCCAAACACCAACTACAGCTATTGATTTGCGTCAGCACACTGGTTATGGAACCTT
TCATGTTCACACTTATATCAATATCAATGGAAAAATGGTTGGTTTAAACGGAACGACTTTCAAAGTAGAAAAACCAGCTA
GCGGCACGGTTTCTACAACCGTTTTAGGAAAGACTGCTCAAATATCCTTTACTCGAAACAAAGATCAAACAAATGCCAAT
ATTTTACACGCTGTTTGGTCTGACGAAAAAGGACAAGATGACATCAAGTGGTATACGGCAGGGCAAGACACAACAGAAAT
TGACTTATCCAATCATAAAGGATACGGTGTTTACCATGTTCATACTTATGAAAGTAAAAACGGAAAGATGATTGGATTAA
ATGGCACCACTTTTAACCTTGAAAAACCAAATCCTACTATTCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAG
ATCAAAAATGTTCCTAAAACAATCTACAAACTAACTGTTCCGGCTTGGTCTGACCGCAACGGACAGGATGATCTTCAATG
GTATGCAGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTT
ATCACATTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATAACTGCCCAAGTTGATGCT
GATAAATTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATCAAGAACAAGGGACTTATACCGT
CAAAGTTAGTGAAACTTCAAAGTCCAAACCGATTCAATCTGTCCGAGTACCTATTTGGAGCACGAGCAATCAAAGCAATA
TCAAGTGGTATGCAGCCACTAATCACGGTGATGGAACCTTTACGACAAGCTTTGATATTCGCAATTATCAAGTTTTGTCC
GGAACATACACCAATCATATTTATGTGAAATATAAAGACGGTAGCGAGCATAGTTACGCAACGGATTCGGTTGCTATGTC
CGCAGAAAAAATTAAAACCAAAGTATCTGTCGCTAAACGCTCAACTTATCTTTATGAAGTGACGGTGACAGATGCTTACG
GCGATGGCAAGATCAGCCTACCGACTTGGTCTGAAGTCAATGGACAAGACGATATTCAGTGGTACACTGCTACTAAAGCT
GGAAATGGAATTTACAAATTCACAATTGATACGCAAAAACACACTGGCAGCGGGCTTTTCCATACACATGTCTACCGCAA
TCTCAACGGTCAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAGCCTGCTATCTCTTTCCAACCAAATTATG
CCGCAGCAACGACTTATCCAAAAGGTCAATGCACTTGGGGCGCCAAAGCTCTTGCGCCTTGGGCTGGCAATTATTGGGGC
AACGGTGGCGACTGGGCTGCTAGTGCCAGACGAGCTGGTTTTAAAACCGGTACAACTCCACAAGTAGGGGCTATTATTTG
TTGGACAGACGGTGGTTACGGTCACGTTGGAGTTGTTACTCACGTTGCCTCAAACACACGCATTCAGATTCAAGAGGCCA
ACTACGCTGGAAAACAATATATTGGCAACTTCCGCGGCTGGTTCAATCCTCATGCAGCTGGACAAGGAGCAGTTAGTTAC
ATTTATCCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(437-518)

GBS Bsp-like repeat (GBS_Bsp-like)

(151-218)

GBS Bsp-like repeat (GBS_Bsp-like)

(232-302)

GBS Bsp-like repeat (GBS_Bsp-like)

(67-126)

GBS Bsp-like repeat (GBS_Bsp-like)

(335-421)

CHAP domain (CHAP)

(537-614)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

45.594

81.056

0.37

Multiple sequence alignment