Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NGFG_RS11690 Genome accession   NC_022240
Coordinates   2146717..2147685 (-) Length   322 a.a.
NCBI ID   WP_003694627.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae MS11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2141717..2152685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS11665 (NGFG_00035) - 2142259..2143566 (-) 1308 WP_017147158.1 YadA-like family protein -
  NGFG_RS11670 (NGFG_02488) - 2143552..2144205 (+) 654 WP_017147157.1 IS1595 family transposase -
  NGFG_RS11675 (NGFG_00036) - 2144240..2144998 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  NGFG_RS11680 (NGFG_00037) - 2145082..2145708 (-) 627 WP_003690385.1 FmdE family protein -
  NGFG_RS11685 (NGFG_00038) - 2145753..2146727 (-) 975 WP_003687049.1 iron chelate uptake ABC transporter family permease subunit -
  NGFG_RS11690 (NGFG_00039) ceuB 2146717..2147685 (-) 969 WP_003694627.1 ABC transporter permease Machinery gene
  NGFG_RS14020 - 2147704..2147895 (-) 192 WP_162098494.1 hypothetical protein -
  NGFG_RS11695 (NGFG_00041) - 2147913..2148878 (-) 966 WP_003687054.1 siderophore ABC transporter substrate-binding protein -
  NGFG_RS11700 (NGFG_00042) fetA 2149030..2151195 (-) 2166 WP_003687055.1 TonB-dependent siderophore receptor FetA/FrpB -
  NGFG_RS11705 (NGFG_00043) - 2151701..2151991 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34400.69 Da        Isoelectric Point: 10.0891

>NTDB_id=50837 NGFG_RS11690 WP_003694627.1 2146717..2147685(-) (ceuB) [Neisseria gonorrhoeae MS11]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLMGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=50837 NGFG_RS11690 WP_003694627.1 2146717..2147685(-) (ceuB) [Neisseria gonorrhoeae MS11]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAACAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAGCTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGTTGGGCGTGTGGCAGCAGGGCGACTTTTCAAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGATGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment