Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3X05_RS13710 Genome accession   NZ_CP065217
Coordinates   2924473..2924991 (-) Length   172 a.a.
NCBI ID   WP_039430460.1    Uniprot ID   A0A0F2HW57
Organism   Vibrio navarrensis strain 20-VB00237     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2919473..2929991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS13685 (I3X05_14030) rimM 2919551..2920099 (-) 549 WP_045571212.1 ribosome maturation factor RimM -
  I3X05_RS13690 (I3X05_14035) rpsP 2920114..2920362 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  I3X05_RS13695 (I3X05_14040) ffh 2920618..2921997 (-) 1380 WP_045571213.1 signal recognition particle protein -
  I3X05_RS13700 (I3X05_14045) - 2922210..2923004 (+) 795 WP_045571214.1 inner membrane protein YpjD -
  I3X05_RS13705 (I3X05_14050) - 2923114..2924391 (+) 1278 WP_039437916.1 CNNM domain-containing protein -
  I3X05_RS13710 (I3X05_14055) luxS 2924473..2924991 (-) 519 WP_039430460.1 S-ribosylhomocysteine lyase Regulator
  I3X05_RS13715 (I3X05_14060) - 2925055..2925699 (-) 645 WP_045571215.1 hypothetical protein -
  I3X05_RS13720 (I3X05_14065) gshA 2925674..2927239 (-) 1566 WP_337970803.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18932.71 Da        Isoelectric Point: 4.8362

>NTDB_id=508205 I3X05_RS13710 WP_039430460.1 2924473..2924991(-) (luxS) [Vibrio navarrensis strain 20-VB00237]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLYAGFMRKHLNGESVEIIDISP
MGCRTGFYMSLIGAPTEQSVAAAWQASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIASNILAAGISVNKNDDLA
LPAEMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=508205 I3X05_RS13710 WP_039430460.1 2924473..2924991(-) (luxS) [Vibrio navarrensis strain 20-VB00237]
ATGCCGTTATTAGATAGTTTTACCGTCGATCACACGAGAATGCAGGCACCGGCCGTGCGTGTTGCCAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGATTTGCGTTTTACTGTGCCAAACCAAGACATTTTGTCGGAAAAAGGGATCC
ACACCTTAGAGCATTTGTATGCTGGCTTTATGCGCAAGCACCTCAATGGAGAGAGTGTAGAGATCATCGACATTTCGCCA
ATGGGGTGTCGCACTGGTTTTTACATGAGCCTGATTGGTGCGCCGACAGAGCAAAGCGTTGCTGCTGCGTGGCAAGCGTC
GATGGAAGATGTACTGAAAGTGGAAAGCCAGAACAAGATCCCAGAGCTGAACGAGTACCAATGCGGTACGGCGGCGATGC
ACTCGCTGGAAGAGGCAAAACAGATCGCCAGCAACATTCTCGCCGCGGGTATCTCAGTCAATAAAAACGACGACTTAGCA
TTGCCAGCAGAGATGCTCAAAGAGTTGAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86