Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   I3X05_RS11345 Genome accession   NZ_CP065217
Coordinates   2375873..2377291 (-) Length   472 a.a.
NCBI ID   WP_045570812.1    Uniprot ID   A0A0F2HZ55
Organism   Vibrio navarrensis strain 20-VB00237     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2370873..2382291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS11310 (I3X05_11650) moaE 2371511..2371972 (-) 462 WP_045570805.1 molybdopterin synthase catalytic subunit MoaE -
  I3X05_RS11315 (I3X05_11655) moaD 2371975..2372220 (-) 246 WP_045570806.1 molybdopterin synthase sulfur carrier subunit -
  I3X05_RS11320 (I3X05_11660) moaC 2372217..2372696 (-) 480 WP_045570807.1 cyclic pyranopterin monophosphate synthase MoaC -
  I3X05_RS11325 (I3X05_11665) moaB 2372707..2373219 (-) 513 WP_045570808.1 molybdenum cofactor biosynthesis protein B -
  I3X05_RS11330 (I3X05_11670) moaA 2373294..2374283 (-) 990 WP_045570809.1 GTP 3',8-cyclase MoaA -
  I3X05_RS11335 (I3X05_11675) - 2374586..2375479 (+) 894 WP_045570810.1 YvcK family protein -
  I3X05_RS11340 (I3X05_11680) luxU 2375542..2375889 (-) 348 WP_045570811.1 quorum-sensing phosphorelay protein LuxU -
  I3X05_RS11345 (I3X05_11685) luxO 2375873..2377291 (-) 1419 WP_045570812.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  I3X05_RS11350 (I3X05_11690) uvrB 2377554..2379584 (-) 2031 WP_045570813.1 excinuclease ABC subunit UvrB -
  I3X05_RS11360 (I3X05_11700) vceB 2380302..2381837 (-) 1536 WP_045570814.1 multidrug efflux MFS transporter permease subunit VceB -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52805.30 Da        Isoelectric Point: 6.1989

>NTDB_id=508199 I3X05_RS11345 WP_045570812.1 2375873..2377291(-) (luxO) [Vibrio navarrensis strain 20-VB00237]
MQHTTDAPRSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKASH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNEADSPANQNYQGFIGSSQKMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSPQVLDRFNEYEWPGNVRQLQNVLRNIVVLNNGKEITMEMLPPPLNQPLARSE
NRLFKELEPVSVTDIYPLWMTEKMAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQTWNGKEESRARDGITE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=508199 I3X05_RS11345 WP_045570812.1 2375873..2377291(-) (luxO) [Vibrio navarrensis strain 20-VB00237]
ATGCAACATACTACTGATGCGCCGCGCTCGCGTTACCTTCTCATGGTGGAAGATACTGCGTCTGTCGCGGCTTTATACCG
ATCCTATTTAACACCATTGGGTATCGACATTAATATTGTTGGTACCGGACGAGATGCGATTGAAAGTCTCAAACACCGAA
TCCCGGATCTGATCCTGCTTGATTTAAGATTGCCTGACATGACTGGAATGGATGTCCTGCACGCAGTGAAAGCCAGTCAT
CCCGATGTCCCGATAATCTTTATGACCGCGCACGGTTCGATAGATACTGCAGTCGAGGCGATGCGTCATGGCTCGCAAGA
CTTCTTGATTAAACCTTGTGAAGCAGACCGCTTGCGGGTCACGGTCAATAACGCCATTCGTAAAGCCAGCAAACTGAAAA
ATGAAGCTGACAGTCCAGCTAATCAGAATTACCAAGGTTTCATCGGTAGTAGTCAAAAAATGCAGCAGGTGTACCGCACC
ATAGACTCAGCGGCGAGCAGCAAAGCGAGTATTTTCATCACCGGAGAAAGTGGCACAGGTAAAGAAGTTTGTGCAGAGGC
CATTCACGCCGCGAGTCGTCGTGGTGACAAGCCTTTCATCGCCATTAACTGCGCGGCTATTCCCAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTAAAAGGTGCCTTTACAGGCGCGGCTACTGACCGGCAAGGGGCCGCAGAATTGGCCGATGGC
GGTACGTTGTTTCTTGATGAGCTGTGCGAAATGGATTTGGATTTGCAGACCAAGTTGCTGCGCTTTATCCAAACAGGCAC
GTTCCAGAAAGTCGGTTCGTCAAAAATGAAAAGTGTTGACGTGCGTTTTGTTTGCGCAACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAGGGGCGCTTTCGTGAGGACTTGTACTACCGTTTGTACGTGATCCCACTGCATCTTCCTCCGCTGCGAGAG
CGGGGAGAGGATGTGATAGAGATCGCCTATTCTTTACTTGGTTATATGTCTCATGAGGAGGGTAAAAACTTTGTACGTTT
CTCTCCACAGGTACTTGATCGATTCAATGAGTACGAATGGCCCGGCAATGTGCGACAGCTACAAAACGTACTGCGTAATA
TCGTAGTACTAAACAATGGTAAGGAAATTACCATGGAAATGTTACCACCGCCGTTAAATCAACCGTTAGCTCGCAGCGAA
AATCGCCTATTCAAAGAGTTAGAGCCGGTTTCTGTAACAGATATCTACCCGTTATGGATGACAGAAAAAATGGCGATTGA
GCAGGCGATAAAAGCGTGTGATGGCAATATTCCACGTGCCGCAGGTTACTTGGACGTTAGTCCATCGACTATCTATCGCA
AACTCCAGACTTGGAATGGAAAAGAAGAGAGCAGGGCCCGTGATGGAATTACTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HZ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.093

95.975

0.826