Detailed information NTG0508181

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: I3X05_RS01315
• Genome accession: NZ_CP065217
• Coordinates: 296555..297562 (-)
• Length: 335 a.a.
• NCBI ID: WP_045569777.1
• Uniprot ID: A0A0F2I720
• Organism: Vibrio navarrensis strain 20-VB00237
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 291555..302562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3X05_RS01290 (I3X05_01285)	rraA	291888..292391 (-)	504	WP_193168263.1	ribonuclease E activity regulator RraA	-
I3X05_RS01295 (I3X05_01290)	-	292467..293384 (-)	918	WP_337970914.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
I3X05_RS01300 (I3X05_01295)	hslU	293820..295151 (-)	1332	WP_193243143.1	HslU--HslV peptidase ATPase subunit	-
I3X05_RS01305 (I3X05_01300)	hslV	295177..295731 (-)	555	WP_039422960.1	ATP-dependent protease subunit HslV	-
I3X05_RS01310 (I3X05_01305)	-	295887..296432 (-)	546	WP_039422963.1	SPOR domain-containing protein	-
I3X05_RS01315 (I3X05_01310)	cytR	296555..297562 (-)	1008	WP_045569777.1	DNA-binding transcriptional regulator CytR	Regulator
I3X05_RS01320 (I3X05_01315)	priA	297764..299965 (-)	2202	WP_337970915.1	primosomal protein N'	-
I3X05_RS01325 (I3X05_01320)	rpmE	300227..300448 (+)	222	WP_193167878.1	50S ribosomal protein L31	-
I3X05_RS01330 (I3X05_01325)	-	300747..302027 (+)	1281	WP_193187580.1	malic enzyme-like NAD(P)-binding protein	-
I3X05_RS01335 (I3X05_01330)	metJ	302139..302456 (-)	318	WP_039422980.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36872.40 Da
• Isoelectric Point: 5.4528

>NTDB_id=508181 I3X05_RS01315 WP_045569777.1 296555..297562(-) (cytR) [Vibrio navarrensis strain 20-VB00237]
MATMKDVAQLAGVSTATVSRALMNPEKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFTEIIRG
IEDAAMEQGYLVLLGDSGQQKRRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPSSAVLCQFRQQGYQQALRRAGITMNPDYCAEAEFSFAGGTEAIRQLLELPEPPTA
VFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEVLKGHEIHSGSRLLE
TQLVIRGSAAPPRLR

Nucleotide

• Length: 1008 bp

>NTDB_id=508181 I3X05_RS01315 WP_045569777.1 296555..297562(-) (cytR) [Vibrio navarrensis strain 20-VB00237]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGTGTCTCGACCGCCACGGTCTCAAGAGCACTAATGAATCCCGAAAA
AGTGTCGGCCACCACCAGAAAACGGGTGGAAGACGCGGTTTTAGAGGCTGGATATTCACCAAACTCGCTTGCAAGAAATT
TACGTCGGAACGAATCAAAAACCATAGTAACGATTGTCCCAGACATCTGTGACCCTTACTTTACCGAGATTATTCGCGGT
ATCGAAGACGCAGCGATGGAGCAAGGCTACTTGGTTCTACTGGGCGACAGTGGTCAGCAAAAGCGTCGCGAAAGCTCGTT
CGTCAACCTTGTCTTCACCAAACAAGCCGATGGTATGTTGCTGCTTGGCACCGATCTGCCGTTTGATGTCAGCAAGCCGG
AGCAGAAAAACCTGCCGCCGATGGTGATGGCGTGTGAGTTCGCCCCCGAGCTCGAACTGCCCACCGTGCACATCGACAAC
CTAACCTCGGCGTTTGAAGCCGTGAACTACTTAACCCAGTTGGGTCACAAACGCATCGCGCAAATCTCAGGTCCATCGTC
TGCGGTGCTGTGTCAGTTCCGTCAGCAAGGCTATCAACAAGCGCTACGACGCGCTGGCATCACCATGAACCCGGATTACT
GCGCGGAAGCCGAATTCTCGTTCGCCGGCGGTACAGAGGCCATTCGCCAGTTGTTAGAGTTACCTGAACCGCCGACAGCC
GTATTCTGCCACTGCGACACCATGGCGATTGGCGCGATTCAAGAAGCGAAAAAACTGGGCCTGCGCGTTCCACAAGATCT
CTCCGTGGTCGGTTTTGACGACATTCAATTTGCCCAGTACTGCGATCCCCCTTTAACCACCATCTCTCAGCCGCGCTATG
AGATTGGCCGTCAAGCGATGTTGATGATGCTTGAAGTGCTCAAAGGGCATGAGATCCACAGCGGCTCTCGCCTGCTCGAA
ACGCAACTGGTGATCCGTGGCAGCGCCGCGCCACCGAGATTGCGTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	91.291	99.403	0.907
cytR	Vibrio cholerae C6706	89.157	99.104	0.884