Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I3X02_RS25280 Genome accession   NZ_CP065213
Coordinates   4857733..4858230 (-) Length   165 a.a.
NCBI ID   WP_243555849.1    Uniprot ID   -
Organism   Priestia megaterium strain HGS7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4852733..4863230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X02_RS25245 csrA 4853189..4853419 (-) 231 WP_013085431.1 carbon storage regulator CsrA -
  I3X02_RS25250 fliW 4853444..4853866 (-) 423 WP_014457794.1 flagellar assembly protein FliW -
  I3X02_RS25255 flgL 4853947..4854828 (-) 882 WP_140451790.1 flagellar hook-associated protein FlgL -
  I3X02_RS25260 flgK 4854831..4856342 (-) 1512 WP_209368049.1 flagellar hook-associated protein FlgK -
  I3X02_RS25265 - 4856361..4856822 (-) 462 WP_223260217.1 flagellar protein FlgN -
  I3X02_RS25270 flgM 4856844..4857098 (-) 255 WP_014457790.1 flagellar biosynthesis anti-sigma factor FlgM -
  I3X02_RS25275 - 4857258..4857671 (-) 414 WP_182421401.1 TIGR03826 family flagellar region protein -
  I3X02_RS25280 comFC 4857733..4858230 (-) 498 WP_243555849.1 phosphoribosyltransferase family protein Machinery gene
  I3X02_RS25285 - 4858425..4859930 (-) 1506 WP_243555848.1 DEAD/DEAH box helicase -
  I3X02_RS25290 - 4860010..4860855 (-) 846 WP_014457786.1 DegV family protein -
  I3X02_RS25295 - 4860962..4861399 (-) 438 WP_115655071.1 YaaR family protein -
  I3X02_RS25300 fliS 4861520..4861951 (-) 432 WP_209369400.1 flagellar export chaperone FliS -
  I3X02_RS25305 - 4862335..4863018 (-) 684 WP_013059772.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19328.12 Da        Isoelectric Point: 8.4544

>NTDB_id=508169 I3X02_RS25280 WP_243555849.1 4857733..4858230(-) (comFC) [Priestia megaterium strain HGS7]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELLSDNIEIPLIRCSGTKQSKKNRRSRLTERLEFKVVDPSMVTNQEFILIDDIYTTGATVRQAANCLQEAGARSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=508169 I3X02_RS25280 WP_243555849.1 4857733..4858230(-) (comFC) [Priestia megaterium strain HGS7]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTTAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCCAAAGCTATACTAGTTCCTATACCTTTAACGGACGAAAGGTTATATGAGAGAGGGTTTAACCAATCCTTAGCG
CTAGCTGAGCTTCTCAGTGACAATATAGAAATACCTCTTATTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGACAGAAAGGCTGGAATTTAAAGTAGTCGATCCCTCAATGGTTACGAATCAAGAATTTATCTTAATTGATG
ACATTTATACAACGGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACGTTCGGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.503