Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I3X02_RS21925 Genome accession   NZ_CP065213
Coordinates   4227830..4229557 (-) Length   575 a.a.
NCBI ID   WP_014458250.1    Uniprot ID   -
Organism   Priestia megaterium strain HGS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4222830..4234557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X02_RS21895 - 4223468..4223719 (+) 252 WP_209367840.1 hypothetical protein -
  I3X02_RS21900 - 4223684..4224007 (-) 324 WP_189645102.1 Imm8 family immunity protein -
  I3X02_RS21905 - 4224049..4224426 (-) 378 WP_116742560.1 hypothetical protein -
  I3X02_RS21910 - 4224451..4224981 (-) 531 WP_209367842.1 DUF2247 family protein -
  I3X02_RS21915 spo0A 4225350..4226138 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  I3X02_RS21920 spoIVB 4226366..4227646 (-) 1281 WP_028411587.1 SpoIVB peptidase -
  I3X02_RS21925 recN 4227830..4229557 (-) 1728 WP_014458250.1 DNA repair protein RecN Machinery gene
  I3X02_RS21930 argR 4229574..4230023 (-) 450 WP_013059136.1 transcriptional regulator ArgR -
  I3X02_RS21935 - 4230185..4231012 (-) 828 WP_014458249.1 TlyA family RNA methyltransferase -
  I3X02_RS21940 dxs 4231009..4232910 (-) 1902 WP_014458248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I3X02_RS21945 - 4233231..4234127 (-) 897 WP_014458247.1 polyprenyl synthetase family protein -
  I3X02_RS21950 - 4234127..4234360 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64625.19 Da        Isoelectric Point: 4.8260

>NTDB_id=508156 I3X02_RS21925 WP_014458250.1 4227830..4229557(-) (recN) [Priestia megaterium strain HGS7]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVAFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=508156 I3X02_RS21925 WP_014458250.1 4227830..4229557(-) (recN) [Priestia megaterium strain HGS7]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCATGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGTATCAATGGGAAGCTCGTAACGTTAGCTATCCTACGTGAAGTCGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGATATACATCATTAAAAAAGCAGTTGGATCAATTAACTGAAAATGAGCAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAACTCAATGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCCAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTGGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCGTCACTGGAAAAAAACTATGCCGA
AATTTCGGAGATTATTTCATCGAGCTTCTATCAGTTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTGGATTTATTAG
AATTTGATCCGAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCATTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATAGAGATACGCACGTGAGCAA
AATCAAAGAACAGTTAAACAGCGTAGCACAGGATTTATTAGTAGAAGCTAACAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCCAAAACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACTAAAGATGGTATTGATAACGTAGC
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAAAGCATCTTCTCTAAACATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGGGTAAGC
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCACAGGTTCTTTGCATATCTCATTTGCC
GCAAGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACCACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAGATTGGTCGGATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAAGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65