Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I3X02_RS19005 Genome accession   NZ_CP065213
Coordinates   3648192..3648608 (+) Length   138 a.a.
NCBI ID   WP_181170505.1    Uniprot ID   -
Organism   Priestia megaterium strain HGS7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3643192..3653608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X02_RS18985 - 3643573..3644244 (-) 672 WP_014458698.1 response regulator transcription factor -
  I3X02_RS18990 - 3644570..3645388 (+) 819 WP_014458697.1 phytoene/squalene synthase family protein -
  I3X02_RS18995 - 3645424..3647373 (-) 1950 WP_209367601.1 FUSC family protein -
  I3X02_RS19000 - 3647530..3647790 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  I3X02_RS19005 nucA/comI 3648192..3648608 (+) 417 WP_181170505.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I3X02_RS19010 comJ 3648644..3649051 (+) 408 WP_116739299.1 competence protein ComJ -
  I3X02_RS19015 - 3649283..3649873 (-) 591 WP_209367603.1 CPBP family intramembrane glutamic endopeptidase -
  I3X02_RS19020 helD 3650262..3652580 (-) 2319 WP_209367605.1 RNA polymerase recycling motor HelD -
  I3X02_RS27660 - 3652824..3652949 (-) 126 WP_014458690.1 hypothetical protein -
  I3X02_RS19025 - 3653090..3653605 (-) 516 WP_209367607.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15095.72 Da        Isoelectric Point: 4.2601

>NTDB_id=508151 I3X02_RS19005 WP_181170505.1 3648192..3648608(+) (nucA/comI) [Priestia megaterium strain HGS7]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=508151 I3X02_RS19005 WP_181170505.1 3648192..3648608(+) (nucA/comI) [Priestia megaterium strain HGS7]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTGCTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAACCGAGAAGAATCGCTAAAAGGATAC
CCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594