Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I4Q40_RS09860 Genome accession   NZ_CP065211
Coordinates   2016025..2017707 (-) Length   560 a.a.
NCBI ID   WP_025477278.1    Uniprot ID   A0A7W2ALJ4
Organism   Enterococcus lactis strain KCTC 21015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011025..2022707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q40_RS09830 (I4Q40_09830) ftsL 2012298..2012699 (-) 402 WP_002291866.1 cell division protein FtsL -
  I4Q40_RS09835 (I4Q40_09835) rsmH 2012704..2013663 (-) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  I4Q40_RS09840 (I4Q40_09840) mraZ 2013684..2014115 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  I4Q40_RS09845 (I4Q40_09845) - 2014285..2014653 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  I4Q40_RS09850 (I4Q40_09850) - 2014824..2015780 (+) 957 WP_002291874.1 magnesium transporter CorA family protein -
  I4Q40_RS09855 (I4Q40_09855) - 2015853..2015969 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  I4Q40_RS09860 (I4Q40_09860) recN 2016025..2017707 (-) 1683 WP_025477278.1 DNA repair protein RecN Machinery gene
  I4Q40_RS09865 (I4Q40_09865) - 2017725..2018174 (-) 450 WP_002291879.1 arginine repressor -
  I4Q40_RS09870 (I4Q40_09870) - 2018281..2019099 (-) 819 WP_002315411.1 TlyA family RNA methyltransferase -
  I4Q40_RS09875 (I4Q40_09875) - 2019108..2019998 (-) 891 WP_002315412.1 polyprenyl synthetase family protein -
  I4Q40_RS09880 (I4Q40_09880) - 2020000..2020224 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  I4Q40_RS09885 (I4Q40_09885) xseA 2020229..2021566 (-) 1338 WP_002315413.1 exodeoxyribonuclease VII large subunit -
  I4Q40_RS09890 (I4Q40_09890) - 2021567..2022421 (-) 855 WP_002315414.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63394.79 Da        Isoelectric Point: 4.5791

>NTDB_id=508102 I4Q40_RS09860 WP_025477278.1 2016025..2017707(-) (recN) [Enterococcus lactis strain KCTC 21015]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGMTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=508102 I4Q40_RS09860 WP_025477278.1 2016025..2017707(-) (recN) [Enterococcus lactis strain KCTC 21015]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGCGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTATGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2ALJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5