Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ITG08_RS13440 Genome accession   NZ_CP065206
Coordinates   2926168..2927679 (-) Length   503 a.a.
NCBI ID   WP_016785573.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ED653     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2922749..2941990 2926168..2927679 within 0


Gene organization within MGE regions


Location: 2922749..2941990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS13420 (ITG08_13395) - 2922749..2923495 (+) 747 WP_248370472.1 CsgG/HfaB family protein -
  ITG08_RS13425 (ITG08_13400) - 2923510..2924304 (+) 795 WP_102284914.1 hypothetical protein -
  ITG08_RS13430 (ITG08_13405) - 2924414..2925208 (+) 795 WP_102284914.1 hypothetical protein -
  ITG08_RS13435 (ITG08_13410) - 2925318..2926112 (+) 795 WP_248370473.1 hypothetical protein -
  ITG08_RS13440 (ITG08_13415) luxO 2926168..2927679 (-) 1512 WP_016785573.1 sigma-54 dependent transcriptional regulator Regulator
  ITG08_RS13445 (ITG08_13420) - 2927891..2928313 (-) 423 WP_010440937.1 Hpt domain-containing protein -
  ITG08_RS13450 (ITG08_13425) - 2928727..2929971 (-) 1245 WP_010440936.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  ITG08_RS13455 (ITG08_13430) - 2929964..2930863 (-) 900 WP_010440933.1 proline/glycine betaine ABC transporter permease -
  ITG08_RS13460 (ITG08_13435) - 2931123..2932115 (-) 993 WP_010440931.1 ABC transporter substrate-binding protein -
  ITG08_RS13465 (ITG08_13440) - 2932832..2933674 (+) 843 WP_016785572.1 DNA ligase -
  ITG08_RS13470 (ITG08_13445) - 2933818..2935188 (-) 1371 WP_010440918.1 MATE family efflux transporter -
  ITG08_RS13475 (ITG08_13450) - 2935351..2935959 (+) 609 WP_016768086.1 riboflavin synthase -
  ITG08_RS13480 (ITG08_13455) - 2936177..2936380 (-) 204 WP_016768085.1 CPXCG motif-containing cysteine-rich protein -
  ITG08_RS13485 (ITG08_13460) - 2936474..2937340 (-) 867 WP_016768084.1 fructosamine kinase family protein -
  ITG08_RS13490 (ITG08_13465) - 2937887..2938231 (+) 345 WP_010440912.1 DUF3802 family protein -
  ITG08_RS13495 (ITG08_13470) - 2938386..2938871 (-) 486 WP_016768083.1 NlpC/P60 family protein -
  ITG08_RS13500 (ITG08_13475) - 2938976..2941024 (+) 2049 WP_016768082.1 methyl-accepting chemotaxis protein -
  ITG08_RS13505 (ITG08_13480) - 2941181..2941990 (-) 810 WP_016768081.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 56811.29 Da        Isoelectric Point: 5.9137

>NTDB_id=508029 ITG08_RS13440 WP_016785573.1 2926168..2927679(-) (luxO) [Vibrio cyclitrophicus strain ED653]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHSPQLVILDLKLPDMPGEEVLDWISANEIPTAVIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVRLHLKRAKLENLVDNMQSKFDRDRFHDFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRNGKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQADGGTLFL
DELCEMELEMQKKLLRFLQTGTFIPLGGNQEIRVNVRIICATNRDPLVEVAEGRFREDLYYRVHVVPIEMPPLREREGDI
IILADYFLGLYAKEDNKKFDSIDIETQNILKRYNWPGNVRQLQNVIRNIVVLNNEACIRKDMLPPPINLTTVPQPMSIKK
ENQLSEALLTTIDKFETRNQKYLEKALADKNKASSVLTLISNNGNIRPMWKIERETIQHAINYCDGNVINAAVLLELSPS
TVYRKKLIWESEDGNKNIKSSYT

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=508029 ITG08_RS13440 WP_016785573.1 2926168..2927679(-) (luxO) [Vibrio cyclitrophicus strain ED653]
ATGCGCCCTAAAGTATTGTTGGTTGAAGACTCCACCTCCCTTGCCGTACTTTATAAACAGTACGTAAAAGACGAGCCCTA
CGATATTTTCCACGTCGAAACCGGCGCGGAAGCTAAGACTTTTATTGAAAGGCACTCCCCACAGCTTGTTATTCTCGATC
TGAAGTTACCCGACATGCCAGGGGAAGAGGTATTAGATTGGATTAGCGCAAATGAAATACCGACCGCCGTTATTATCGCG
ACAGCCCATGGCTCAGTAAACATTGCGGTAGACCTTATTCAGCGCGGTGCGGAAGACTTCTTAGAGAAACCCATTCAAGC
CGATCGACTCAAAACCTCTGTTCGCTTACATCTAAAACGGGCGAAACTCGAAAACCTAGTCGATAACATGCAAAGTAAGT
TCGATCGTGACCGCTTTCATGATTTCATCGGCTCTTGCCTACCCATGCAGGCGGTTTACAAGATCATTGATTCAGTTGCG
CCTACTACTGCTAGCGTGTTTATTAACGGCGAAAGTGGTACGGGTAAAGAAGTGTGTGCAGAAGCGATTCACCAAGAAAG
CCAACGCAACGGTAAACCCTTCGTTGCCATTAACTGTGGTGCTATCCCTCGAGACCTAATGGAGAGTGAAATCTTCGGCC
ACGTAAAAGGTGCGTTTACCGGCGCAACAACAGACCGCAAAGGCGCGGCGATGCAAGCCGATGGTGGCACTCTATTTCTT
GATGAGCTTTGTGAAATGGAGTTAGAGATGCAGAAGAAGCTATTAAGATTTTTACAAACTGGTACTTTCATACCATTAGG
TGGCAATCAAGAAATCAGAGTTAATGTCAGAATTATCTGTGCAACCAACCGTGACCCTCTGGTCGAAGTTGCAGAAGGCA
GGTTCCGTGAAGATCTTTACTACCGTGTGCATGTTGTGCCAATCGAGATGCCACCTCTAAGAGAACGTGAGGGGGACATT
ATTATATTGGCCGATTACTTTCTAGGACTATATGCTAAAGAAGATAACAAAAAATTTGATTCAATAGATATAGAGACACA
AAATATCCTCAAACGATATAACTGGCCGGGTAATGTACGCCAGTTACAAAACGTAATTCGTAATATTGTAGTTTTAAATA
ATGAAGCTTGTATAAGAAAGGACATGTTACCACCTCCTATCAACTTAACAACCGTTCCACAACCAATGTCAATAAAAAAA
GAAAATCAATTGAGTGAAGCCTTATTAACAACAATCGATAAGTTTGAAACCAGAAACCAGAAATATCTTGAAAAAGCACT
AGCAGATAAAAACAAAGCGTCCTCCGTACTAACTCTGATTAGTAATAATGGTAATATTCGACCTATGTGGAAAATAGAAC
GTGAAACGATTCAACATGCTATAAATTATTGTGATGGGAACGTAATTAATGCTGCCGTATTATTAGAACTTAGCCCTTCT
ACAGTTTACCGTAAGAAACTGATTTGGGAATCAGAAGATGGGAATAAAAACATCAAAAGCTCTTACACTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(449-485)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50

96.223

0.481