Detailed information NTG0508028

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ITG08_RS12400
• Genome accession: NZ_CP065206
• Coordinates: 2702970..2704394 (-)
• Length: 474 a.a.
• NCBI ID: WP_010441226.1
• Uniprot ID: A0AAN0LJ83
• Organism: Vibrio cyclitrophicus strain ED653
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2697970..2709394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG08_RS12375 (ITG08_12350)	-	2698502..2699155 (+)	654	WP_010441236.1	thiopurine S-methyltransferase	-
ITG08_RS12380 (ITG08_12355)	purT	2699285..2700460 (-)	1176	WP_010441234.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
ITG08_RS12385 (ITG08_12360)	cdd	2700627..2701514 (-)	888	WP_010441232.1	cytidine deaminase	-
ITG08_RS12390 (ITG08_12365)	-	2701893..2702570 (-)	678	WP_010441230.1	LrgB family protein	-
ITG08_RS12395 (ITG08_12370)	-	2702573..2702944 (-)	372	WP_010441228.1	CidA/LrgA family protein	-
ITG08_RS12400 (ITG08_12375)	sbcB	2702970..2704394 (-)	1425	WP_010441226.1	exodeoxyribonuclease I	Machinery gene
ITG08_RS12405 (ITG08_12380)	-	2705194..2705628 (+)	435	WP_010441224.1	DUF4402 domain-containing protein	-
ITG08_RS12410 (ITG08_12385)	-	2705682..2706119 (+)	438	WP_016786202.1	DUF4402 domain-containing protein	-
ITG08_RS12415 (ITG08_12390)	-	2706116..2706826 (+)	711	WP_010441221.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54631.96 Da
• Isoelectric Point: 4.9171

>NTDB_id=508028 ITG08_RS12400 WP_010441226.1 2702970..2704394(-) (sbcB) [Vibrio cyclitrophicus strain ED653]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=508028 ITG08_RS12400 WP_010441226.1 2702970..2704394(-) (sbcB) [Vibrio cyclitrophicus strain ED653]
ATGAGTTCAGATAATCAGCCAACCTATTTCTTTTTCGATTACGAAACGTGGGGCGTCAGCCCAGCGAAAGATCGCCCGAG
TCAGTTCGCCGGTGTTCGTACCGACCAAGATTTCAACGTTATCGGAGAGCCATTGGTCATCTATTGCCAACCTCCTGCTG
ATTACTTACCAGCGCCGGAAGCTGCACTCATTACTCGCATTACACCTCAAAAAGCGATGTCTCAAGGCTTACCTGAACCT
GAATTTATCGCGAAGATTCACGCAGAGCTTGCTAAGCCGAACACAACTAGCCTTGGCTACAACAGCATTCGATTCGACGA
CGAAGTAACACGCTATACCTGTTACCGTAATTTCATCGATCCATATGCATGGAGCTGGCAGAACGGCAACTCTCGTTGGG
ATCTACTCGACGTGATGCGCGCGGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGAAGAAGGTTACCCA
AGCTTCAAACTGGAACATTTGTCAGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATTGC
TACCATTGAATTAGCAAAGAAGTTGAAGGCTGCACAGCCTAAAATGTTTGATTACCTTTACAGCATGCGTCACAAACGCA
AATTGAATGAGTTAGTTGACATTGTAAACATGACGCCTTTAATGCACGTTTCAGGCATGTTTGGTCGTGATTGTAATTAC
ACGAGTTGGATTGTGCCGATGGCTTGGCACCCAACCAACCAAAATGCGGTTATCGTAGTCGACTTAGCCAAAGATCCTAG
CCCGCTGCTGGAGCTTGATTCTGACGCCCTCCGTGAAAGGCTCTACACTAAACGCAGTGAACTTGGTGAAGACGAGTTAC
CCGTACCCATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTCGCACCCGCCAAAACTCTGACGGCTGAAAATGCGGAA
ACGATAGGTATCGATCGCCAACAGTGCTTAAAGAACTTAGCGCTATTACGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGTTTGTATTCACAAGAACGCGAATACGAGAAAAGTGATGACGTAGACACTCATCTGTATGACGGCTTCTTCTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTCAAACTGACCCAAATAACTTGGCTGCTTTAGACATCACTTTTGGTGACGAA
CGTATTAAACCTTTGTTGTTCCGTTACCGTGCTCGTCATTTCCCGTGGACGTTAGACGAAGCGGAACAACTGAAATGGGC
TAACCACTGTCGAGAGTTTTACGAAAGTCGCTTAGAAGAGTACATGCTGAACCTAGAAAACCTCGCACACGAGCATGAAA
GTGACGAGAAGAAAATGGCTATCTTGAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.533	99.789	0.764