Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ITG08_RS12325 Genome accession   NZ_CP065206
Coordinates   2687418..2688599 (-) Length   393 a.a.
NCBI ID   WP_016788746.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ED653     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2682418..2693599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS12310 (ITG08_12285) - 2683456..2684358 (+) 903 WP_010441258.1 Vmh family MBL fold metallo-hydrolase -
  ITG08_RS12315 (ITG08_12290) - 2684677..2684892 (+) 216 WP_016784527.1 hypothetical protein -
  ITG08_RS12320 (ITG08_12295) - 2685248..2687296 (+) 2049 WP_016768011.1 hybrid sensor histidine kinase/response regulator -
  ITG08_RS12325 (ITG08_12300) cqsA 2687418..2688599 (-) 1182 WP_016788746.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ITG08_RS12330 (ITG08_12305) - 2688808..2690205 (-) 1398 WP_016793554.1 PLP-dependent aminotransferase family protein -
  ITG08_RS12335 (ITG08_12310) - 2690310..2691206 (+) 897 WP_046208893.1 EamA family transporter -
  ITG08_RS12340 (ITG08_12315) - 2691454..2692386 (+) 933 WP_016768014.1 aspartoacylase -
  ITG08_RS12345 (ITG08_12320) - 2692515..2693534 (-) 1020 WP_010441249.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43763.71 Da        Isoelectric Point: 6.1431

>NTDB_id=508027 ITG08_RS12325 WP_016788746.1 2687418..2688599(-) (cqsA) [Vibrio cyclitrophicus strain ED653]
MSDKSKNKPLPSFIEERLNFYIQDLITQNESQKHLVLGSHPSHDAVVMQSNDYLSLSHNEQIQKAHRDAISQHDDNVVMS
AIFLQDEQSKPAFETDLANFMGMESCLLSQSGWAANIGLLQTICPPNMPVYIDFFAHMSLWEGIRAAGATGHPFMHNNMN
HLRKQIQRYGSGVIVVDSVYSTIGTVAPLRDIYEMAQEFDCALVVDESHSLGTHGSNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKASDDKRDTLFKRAKALTTGLKRIGFNIRSESQ
IVALECGSESNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSINADMTPRDIDHVLTACQEAFNHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=508027 ITG08_RS12325 WP_016788746.1 2687418..2688599(-) (cqsA) [Vibrio cyclitrophicus strain ED653]
ATGAGTGATAAATCTAAAAACAAACCACTACCTTCCTTTATTGAAGAACGCTTGAACTTCTATATTCAAGATCTCATTAC
ACAAAACGAAAGCCAAAAACATTTGGTATTGGGGAGTCACCCCAGCCATGACGCAGTGGTAATGCAAAGCAACGATTACC
TATCTTTGTCGCACAATGAACAAATCCAGAAAGCACATCGGGACGCAATTTCACAACACGATGACAATGTGGTGATGTCT
GCCATCTTCTTACAAGATGAACAGTCGAAACCTGCATTTGAAACCGATCTGGCTAACTTTATGGGAATGGAAAGCTGCTT
GCTCTCTCAATCAGGTTGGGCGGCTAACATTGGCTTATTGCAAACGATCTGCCCTCCTAATATGCCTGTGTATATCGATT
TTTTTGCACACATGTCCCTATGGGAGGGTATTCGTGCCGCTGGTGCAACTGGCCACCCATTTATGCACAACAACATGAAT
CACCTTCGTAAACAGATTCAGCGTTATGGTTCGGGTGTGATTGTAGTCGACTCGGTTTACAGCACCATAGGTACGGTAGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCCTTGGTCGTCGATGAATCCCATTCACTAGGCACTC
ATGGTTCAAATGGTGCTGGTTTGGTTCAGGCATTAGGGCTGACTAACAAAGTGGATTTCATTACCGTCAGCTTGGCCAAA
ACCTTTGCCTATCGCGCTGGCGCTATACTCGGCCCTAAGCGATTATCGGAGACATTACCCTTTGTCGCTTACCCTGCTAT
TTTTAGCTCGACCGTACTACCACAAGAAGTTATCCGCTTAGAAAAGACTTTAGAGGTTATTAAAGCCTCTGATGATAAGC
GAGACACCTTGTTCAAACGCGCTAAAGCACTGACTACAGGGCTAAAGCGAATCGGTTTTAACATTCGCAGTGAATCTCAG
ATTGTGGCATTAGAATGTGGCAGTGAAAGCAACACTGAGCGTGTACGTGACTTCTTAGAAGAGCGTGACGTGTTTGGTGC
GGTATTTTGTCGGCCAGCAACAGGCAGAAACAAAAACATCATCCGCTTTTCGATTAACGCAGACATGACGCCGCGGGACA
TCGACCATGTTCTCACAGCATGCCAAGAGGCTTTTAATCACCCTGATTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547