Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ITG08_RS03250 Genome accession   NZ_CP065206
Coordinates   739063..739581 (-) Length   172 a.a.
NCBI ID   WP_010435876.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ED653     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 734063..744581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG08_RS03225 (ITG08_03215) rimM 734096..734650 (-) 555 WP_016768202.1 ribosome maturation factor RimM -
  ITG08_RS03230 (ITG08_03220) rpsP 734675..734923 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  ITG08_RS03235 (ITG08_03225) ffh 735136..736530 (-) 1395 WP_010435884.1 signal recognition particle protein -
  ITG08_RS03240 (ITG08_03230) - 736731..737525 (+) 795 WP_010435882.1 inner membrane protein YpjD -
  ITG08_RS03245 (ITG08_03235) - 737653..738924 (+) 1272 WP_010435880.1 CNNM domain-containing protein -
  ITG08_RS03250 (ITG08_03240) luxS 739063..739581 (-) 519 WP_010435876.1 S-ribosylhomocysteine lyase Regulator
  ITG08_RS03255 (ITG08_03245) - 739606..740256 (-) 651 WP_010435873.1 hypothetical protein -
  ITG08_RS03260 (ITG08_03250) gshA 740267..741835 (-) 1569 WP_010435871.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18980.67 Da        Isoelectric Point: 4.4901

>NTDB_id=508000 ITG08_RS03250 WP_010435876.1 739063..739581(-) (luxS) [Vibrio cyclitrophicus strain ED653]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIISAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=508000 ITG08_RS03250 WP_010435876.1 739063..739581(-) (luxS) [Vibrio cyclitrophicus strain ED653]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCAGCCGTTCGTGTTGCTAAAACAATGCAAAC
CCCGAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ACACGCTTGAGCACTTATATGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGACATTTCACCG
ATGGGTTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACACCTACAGAGCAACAGGTAGCGGACGGCTGGTTGGCAGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAAATTCCTGAGTTGAACGAATACCAATGTGGTACTGCGGCAATGC
ATTCTTTGGATGAAGCGAAAGAGATTGCCAATGCGATCATCTCAGCTGGTATCTCTGTAAACAAAAATGACGAACTGGCG
TTGCCAGAGTCTATGCTACAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884