Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3U01_RS13885 Genome accession   NZ_CP065203
Coordinates   2818739..2819368 (-) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain EC-10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2813739..2824368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3U01_RS13870 (I3U01_13715) helD 2813981..2816035 (-) 2055 WP_001361412.1 DNA helicase IV -
  I3U01_RS13875 (I3U01_13720) yccF 2816158..2816604 (+) 447 WP_001261235.1 YccF domain-containing protein -
  I3U01_RS13880 (I3U01_13725) yccS 2816614..2818776 (+) 2163 WP_000875039.1 YccS family putative transporter -
  I3U01_RS13885 (I3U01_13730) sxy/tfoX 2818739..2819368 (-) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I3U01_RS13890 (I3U01_13735) sulA 2819586..2820095 (+) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  I3U01_RS13895 (I3U01_13740) ompA 2820452..2821504 (+) 1053 WP_001346420.1 porin OmpA -
  I3U01_RS13900 (I3U01_13745) matP 2821582..2822034 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I3U01_RS13905 (I3U01_13750) ycbZ 2822220..2823980 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=507975 I3U01_RS13885 WP_000839133.1 2818739..2819368(-) (sxy/tfoX) [Escherichia coli strain EC-10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=507975 I3U01_RS13885 WP_000839133.1 2818739..2819368(-) (sxy/tfoX) [Escherichia coli strain EC-10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995