Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SANR_RS10390 Genome accession   NC_022239
Coordinates   2125516..2126106 (-) Length   196 a.a.
NCBI ID   WP_003038332.1    Uniprot ID   I0S7L7
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2120516..2131106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS12265 - 2120700..2120780 (-) 81 WP_229031567.1 lipoprotein -
  SANR_RS10365 (SANR_2014) spx 2120866..2121264 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SANR_RS10370 (SANR_2015) recA 2121351..2122496 (-) 1146 WP_003038330.1 recombinase RecA Machinery gene
  SANR_RS10375 (SANR_2016) cinA 2122544..2123812 (-) 1269 WP_003038347.1 competence/damage-inducible protein A Machinery gene
  SANR_RS10380 (SANR_2017) - 2124453..2124824 (+) 372 WP_020999878.1 EamA family transporter -
  SANR_RS10385 (SANR_2018) - 2124933..2125505 (-) 573 WP_003038379.1 DNA-3-methyladenine glycosylase I -
  SANR_RS10390 (SANR_2019) ruvA 2125516..2126106 (-) 591 WP_003038332.1 Holliday junction branch migration protein RuvA Machinery gene
  SANR_RS10395 - 2126205..2126543 (+) 339 WP_003038373.1 hypothetical protein -
  SANR_RS10400 (SANR_2020) hexB 2127018..2128964 (-) 1947 WP_020999879.1 DNA mismatch repair endonuclease MutL Machinery gene
  SANR_RS10405 (SANR_2021) - 2129059..2130207 (-) 1149 WP_003038317.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21568.99 Da        Isoelectric Point: 6.4894

>NTDB_id=50786 SANR_RS10390 WP_003038332.1 2125516..2126106(-) (ruvA) [Streptococcus anginosus C238]
MYEYFKGILSKITAKYIVVEVGQIGYTLHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=50786 SANR_RS10390 WP_003038332.1 2125516..2126106(-) (ruvA) [Streptococcus anginosus C238]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAC
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACGGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTTTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCCGCTCTTAAGATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0S7L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.772

100

0.852
  ruvA Streptococcus pneumoniae D39

84.772

100

0.852
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423

Multiple sequence alignment