Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SMULJ23_RS09155 Genome accession   NC_017768
Coordinates   1875835..1876548 (+) Length   237 a.a.
NCBI ID   WP_002262353.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870835..1881548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS10780 - 1871616..1871954 (-) 339 Protein_1775 lipase -
  SMULJ23_RS09145 (SMULJ23_1785) treC 1872040..1873668 (-) 1629 WP_002270102.1 alpha,alpha-phosphotrehalase -
  SMULJ23_RS09150 (SMULJ23_1786) treP 1873694..1875661 (-) 1968 WP_002265239.1 PTS system trehalose-specific EIIBC component -
  SMULJ23_RS09155 (SMULJ23_1787) treR 1875835..1876548 (+) 714 WP_002262353.1 trehalose operon repressor Regulator
  SMULJ23_RS10665 (SMULJ23_1788) - 1876675..1876812 (+) 138 WP_012997963.1 hypothetical protein -
  SMULJ23_RS09160 (SMULJ23_1789) dexA 1876894..1879446 (-) 2553 WP_080052748.1 dextranase DexA -
  SMULJ23_RS09165 (SMULJ23_1790) dtd 1879930..1880376 (-) 447 WP_014678266.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27795.12 Da        Isoelectric Point: 9.7425

>NTDB_id=50786 SMULJ23_RS09155 WP_002262353.1 1875835..1876548(+) (treR) [Streptococcus mutans LJ23]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQTYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=50786 SMULJ23_RS09155 WP_002262353.1 1875835..1876548(+) (treR) [Streptococcus mutans LJ23]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGACCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGTCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996

Multiple sequence alignment