Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   I2439_RS10310 Genome accession   NZ_CP065191
Coordinates   2153644..2154417 (+) Length   257 a.a.
NCBI ID   WP_196819730.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148644..2159417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS10300 (HIEAAJJG_02080) rlmH 2151612..2152091 (-) 480 WP_012678751.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I2439_RS10305 (HIEAAJJG_02081) htrA 2152301..2153524 (+) 1224 WP_012516520.1 trypsin-like peptidase domain-containing protein Regulator
  I2439_RS10310 (HIEAAJJG_02082) spo0J 2153644..2154417 (+) 774 WP_196819730.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29177.89 Da        Isoelectric Point: 10.0028

>NTDB_id=507857 I2439_RS10310 WP_196819730.1 2153644..2154417(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EMSTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLKKNDSGQLQ
LSFSNQEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=507857 I2439_RS10310 WP_196819730.1 2153644..2154417(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTGGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATCCCAGCAATTGTTAAG
GAAATGTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTCATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAACTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCAAAAAAAATGACAGTGGGCAGCTGCAG
CTATCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGCTAAAGTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

61.719

99.611

0.615