Detailed information NTG0507828

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2439_RS05800
• Genome accession: NZ_CP065191
• Coordinates: 1210164..1212257 (+)
• Length: 697 a.a.
• NCBI ID: WP_196819629.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ46
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1205164..1217257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2439_RS05780 (HIEAAJJG_01170)	-	1205373..1206656 (-)	1284	WP_196819626.1	homoserine dehydrogenase	-
I2439_RS05785 (HIEAAJJG_01171)	-	1206827..1207792 (+)	966	WP_196819627.1	polysaccharide deacetylase family protein	-
I2439_RS05790 (HIEAAJJG_01172)	-	1208078..1208884 (-)	807	WP_196819628.1	DNA/RNA non-specific endonuclease	-
I2439_RS05795 (HIEAAJJG_01173)	ndk	1209374..1209793 (-)	420	WP_037581033.1	nucleoside-diphosphate kinase	-
I2439_RS05800 (HIEAAJJG_01174)	clpC	1210164..1212257 (+)	2094	WP_196819629.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2439_RS05805 (HIEAAJJG_01175)	-	1212447..1215449 (-)	3003	WP_196819630.1	leucine-rich repeat domain-containing protein	-
I2439_RS05810 (HIEAAJJG_01176)	-	1215535..1215780 (-)	246	WP_111692487.1	hypothetical protein	-
I2439_RS05815 (HIEAAJJG_01177)	yihA	1215823..1216422 (-)	600	WP_196820103.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76677.74 Da
• Isoelectric Point: 5.1764

>NTDB_id=507828 I2439_RS05800 WP_196819629.1 1210164..1212257(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MITYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAAAEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAAEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGAND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=507828 I2439_RS05800 WP_196819629.1 1210164..1212257(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGATAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTTAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAGCTGAAGGACAAGACAAACAGGCTGGCAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCGACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAACCCTGTGCTTGTCGGTGACGCTGGCGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATCGTCAATGGTGATGTACCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAAGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATTCTTGGTGCAGGGTCAGCTGGTTCAGACTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATATTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATTCTGCCAGATTCTGTCTTAAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGCAGAAGA
CTTTGAAAAGGCCTTGACTGCTAAGACACGCATTGAGGAGCTCCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGACATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGGCTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAACAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGCTCCTTCCTTTTTGTTGGTCCGACTGGTG
TCGGCAAGACCGAGCTGGCTAAGCAGCTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGACAAGGCAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGGATTAGCCTTGAGGTGACTGATGATGTT
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCGATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGCATTACGGATTACTACCTGGATCACCCGACTGCTAAACACCTATTAGCAAGCCTTGATCAAGATACTATTACGA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.207	100	0.482
clpE	Streptococcus mutans UA159	48.311	97.704	0.472
clpE	Streptococcus pneumoniae Rx1	50.794	90.387	0.459
clpE	Streptococcus pneumoniae D39	50.794	90.387	0.459
clpE	Streptococcus pneumoniae R6	50.794	90.387	0.459
clpE	Streptococcus pneumoniae TIGR4	50.794	90.387	0.459
clpC	Bacillus subtilis subsp. subtilis str. 168	45.833	89.527	0.41
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.718	88.666	0.379
clpC	Streptococcus thermophilus LMG 18311	42.557	88.666	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376