Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SMULJ23_RS08395 Genome accession   NC_017768
Coordinates   1733492..1734892 (-) Length   466 a.a.
NCBI ID   WP_014678227.1    Uniprot ID   -
Organism   Streptococcus mutans LJ23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728492..1739892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS08370 (SMULJ23_1639) - 1729010..1729558 (-) 549 WP_002262515.1 hypothetical protein -
  SMULJ23_RS08375 (SMULJ23_1640) - 1729625..1730149 (-) 525 WP_002265005.1 transcription repressor NadR -
  SMULJ23_RS08380 (SMULJ23_1641) gltX 1730265..1731722 (-) 1458 WP_014678226.1 glutamate--tRNA ligase -
  SMULJ23_RS08385 (SMULJ23_1642) - 1732006..1732719 (-) 714 WP_002262518.1 TIGR00266 family protein -
  SMULJ23_RS08390 (SMULJ23_1643) - 1732908..1733402 (-) 495 WP_002262519.1 carbonic anhydrase -
  SMULJ23_RS08395 (SMULJ23_1644) radA 1733492..1734892 (-) 1401 WP_014678227.1 DNA repair protein RadA Machinery gene
  SMULJ23_RS08400 (SMULJ23_1645) - 1734850..1735320 (-) 471 WP_002291222.1 isochorismatase family cysteine hydrolase -
  SMULJ23_RS08405 (SMULJ23_1646) - 1735330..1735773 (-) 444 WP_002291220.1 dUTP diphosphatase -
  SMULJ23_RS08410 (SMULJ23_1647) - 1736097..1737116 (+) 1020 WP_014678228.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SMULJ23_RS08415 (SMULJ23_1648) galU 1737118..1738038 (+) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SMULJ23_RS08420 (SMULJ23_1649) - 1738060..1738731 (-) 672 WP_002299081.1 rhomboid family intramembrane serine protease -
  SMULJ23_RS08425 (SMULJ23_1650) - 1738718..1739254 (-) 537 WP_002277594.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51149.65 Da        Isoelectric Point: 6.7118

>NTDB_id=50779 SMULJ23_RS08395 WP_014678227.1 1733492..1734892(-) (radA) [Streptococcus mutans LJ23]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYISGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPQNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=50779 SMULJ23_RS08395 WP_014678227.1 1733492..1734892(-) (radA) [Streptococcus mutans LJ23]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATA
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAATATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCCAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

AAA domain (AAA_25)

(77-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.717

96.996

0.861
  radA Streptococcus pneumoniae D39

88.717

96.996

0.861
  radA Streptococcus pneumoniae R6

88.717

96.996

0.861
  radA Streptococcus pneumoniae TIGR4

88.717

96.996

0.861
  radA Streptococcus mitis SK321

88.717

96.996

0.861
  radA Streptococcus mitis NCTC 12261

88.496

96.996

0.858
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

97.21

0.605

Multiple sequence alignment