Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   I2438_RS03460 Genome accession   NZ_CP065190
Coordinates   671420..672457 (+) Length   345 a.a.
NCBI ID   WP_138118935.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ36     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 666420..677457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2438_RS03435 (HCFMJIKG_00676) - 666732..668063 (+) 1332 WP_012678324.1 dipeptidase -
  I2438_RS03440 (HCFMJIKG_00677) arcC 668081..669031 (+) 951 WP_012678323.1 carbamate kinase -
  I2438_RS03445 (HCFMJIKG_00678) asnA 669251..670243 (+) 993 WP_012515219.1 aspartate--ammonia ligase -
  I2438_RS03450 (HCFMJIKG_00679) rsmD 670413..670952 (+) 540 WP_012515220.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I2438_RS03455 (HCFMJIKG_00680) coaD 670942..671442 (+) 501 WP_165626925.1 pantetheine-phosphate adenylyltransferase -
  I2438_RS03460 (HCFMJIKG_00681) sepM 671420..672457 (+) 1038 WP_138118935.1 SepM family pheromone-processing serine protease Regulator
  I2438_RS03465 (HCFMJIKG_00682) - 673056..673670 (+) 615 WP_012679162.1 YutD family protein -
  I2438_RS03470 (HCFMJIKG_00683) rlmN 673674..674756 (+) 1083 WP_021320490.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I2438_RS03475 (HCFMJIKG_00684) - 675345..676223 (+) 879 WP_337972323.1 ABC transporter ATP-binding protein -
  I2438_RS03480 (HCFMJIKG_00685) - 676227..676952 (+) 726 WP_012515226.1 ABC transporter permease -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37449.11 Da        Isoelectric Point: 9.5289

>NTDB_id=507757 I2438_RS03460 WP_138118935.1 671420..672457(+) (sepM) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MKTIKKFKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKKDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVDKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=507757 I2438_RS03460 WP_138118935.1 671420..672457(+) (sepM) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATGAAAACAATAAAAAAATTTAAATGGTGGCTGATCGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAAAGGATAAGG
AAAAGGGGGCTTATCAGTTTGTTGTAGTGAGTCTAAGTCGGGCCACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGACTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTATCAGGCTCTTACTCTAGCAGGTAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGACTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGTAAA
ACATTTACAACGTCTGCGGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACCGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACTATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGGATAAGGACGTCAAAAAAGCAAATCCTAAGGCCATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)

PDZ domain (PDZ_2)

(130-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.855

100

0.699