Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2438_RS01520 Genome accession   NZ_CP065190
Coordinates   270650..272011 (+) Length   453 a.a.
NCBI ID   WP_037583986.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 265650..277011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2438_RS01505 (HCFMJIKG_00291) - 267232..269028 (+) 1797 WP_012678599.1 ABC transporter ATP-binding protein -
  I2438_RS01510 (HCFMJIKG_00292) - 269190..269957 (+) 768 WP_021320317.1 epoxyqueuosine reductase QueH -
  I2438_RS01515 (HCFMJIKG_00293) - 270137..270583 (+) 447 WP_021320318.1 dUTP diphosphatase -
  I2438_RS01520 (HCFMJIKG_00294) radA 270650..272011 (+) 1362 WP_037583986.1 DNA repair protein RadA Machinery gene
  I2438_RS01525 - 272162..272326 (-) 165 WP_154224863.1 hypothetical protein -
  I2438_RS01530 (HCFMJIKG_00295) - 272770..273276 (+) 507 WP_012514885.1 beta-class carbonic anhydrase -
  I2438_RS01535 (HCFMJIKG_00296) - 273404..274117 (+) 714 WP_021320320.1 TIGR00266 family protein -
  I2438_RS01540 (HCFMJIKG_00297) gltX 274722..276167 (+) 1446 WP_021320321.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49319.74 Da        Isoelectric Point: 6.7543

>NTDB_id=507748 I2438_RS01520 WP_037583986.1 270650..272011(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESTEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=507748 I2438_RS01520 WP_037583986.1 270650..272011(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGTTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCGGGGAGCTTGGTGTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGACAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGACTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCTGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTCCTCAATCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGTGTTAGTCTGATTATGGCTGTCTTGGAAAAGCGCTGCGGCCTGCTGCTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

83.885

100

0.839
  radA Streptococcus pneumoniae D39

83.885

100

0.839
  radA Streptococcus pneumoniae R6

83.885

100

0.839
  radA Streptococcus pneumoniae TIGR4

83.885

100

0.839
  radA Streptococcus mitis SK321

83.885

100

0.839
  radA Streptococcus mitis NCTC 12261

83.664

100

0.837
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614