Detailed information NTG0507747

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2438_RS01110
• Genome accession: NZ_CP065190
• Coordinates: 180390..182831 (+)
• Length: 813 a.a.
• NCBI ID: WP_231146409.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ36
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 175390..187831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2438_RS01080 (HCFMJIKG_00212)	rpsB	175780..176550 (-)	771	WP_012677249.1	30S ribosomal protein S2	-
I2438_RS01085 (HCFMJIKG_00213)	ahpF	176809..178341 (-)	1533	WP_012677250.1	alkyl hydroperoxide reductase subunit F	-
I2438_RS01090 (HCFMJIKG_00214)	ahpC	178362..178922 (-)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
I2438_RS01100 (HCFMJIKG_00216)	-	179554..179757 (+)	204	WP_012514799.1	cold-shock protein	-
I2438_RS01105 (HCFMJIKG_00217)	-	179929..180390 (+)	462	WP_012514800.1	CtsR family transcriptional regulator	-
I2438_RS01110 (HCFMJIKG_00218)	clpC	180390..182831 (+)	2442	WP_231146409.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2438_RS01115	-	183175..183320 (-)	146	Protein_186	putative holin-like toxin	-
I2438_RS01120 (HCFMJIKG_00219)	-	183600..184031 (+)	432	WP_014622158.1	hypothetical protein	-
I2438_RS01125 (HCFMJIKG_00220)	-	184033..185322 (+)	1290	WP_231146408.1	lipase family protein	-
I2438_RS01130 (HCFMJIKG_00221)	-	185304..185696 (+)	393	WP_024273112.1	hypothetical protein	-
I2438_RS01135 (HCFMJIKG_00222)	-	185677..185967 (+)	291	WP_021320276.1	hypothetical protein	-
I2438_RS01140 (HCFMJIKG_00223)	groES	186267..186554 (+)	288	WP_012514806.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90364.15 Da
• Isoelectric Point: 6.4808

>NTDB_id=507747 I2438_RS01110 WP_231146409.1 180390..182831(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKRLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSHGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=507747 I2438_RS01110 WP_231146409.1 180390..182831(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ36]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCTGTTGATCATTCTTTAGCAGCCATGGTTTTAAGCGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCTATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTCACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAGTTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCTCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACAATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGCTACTTGACGAGTAAGCGGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTACAAAGCATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATATCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGGGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACATGGGAAGTTAGCTTTTGATATTGCTTGA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• AAA lid domain (AAA_lid_9) (374-457)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.662	100	0.747
clpC	Streptococcus thermophilus LMD-9	72.304	100	0.726
clpC	Streptococcus thermophilus LMG 18311	72.059	100	0.723
clpC	Streptococcus pneumoniae Rx1	65.848	100	0.659
clpC	Streptococcus pneumoniae D39	65.848	100	0.659
clpC	Streptococcus pneumoniae TIGR4	65.725	100	0.658
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.865	100	0.503
clpC	Bacillus subtilis subsp. subtilis str. 168	44.072	100	0.453
clpE	Streptococcus mutans UA159	45.356	79.459	0.36