Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IG605_RS02330 Genome accession   NZ_CP065178
Coordinates   482474..483856 (-) Length   460 a.a.
NCBI ID   WP_193407859.1    Uniprot ID   -
Organism   Pectobacterium quasiaquaticum strain A398-S21-F17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 477474..488856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG605_RS02300 (IG605_002290) pepP 477674..478999 (-) 1326 WP_193400819.1 Xaa-Pro aminopeptidase -
  IG605_RS02305 (IG605_002295) - 479056..479643 (-) 588 WP_193400821.1 YecA family protein -
  IG605_RS02310 (IG605_002300) zapA 479830..480159 (+) 330 WP_010284667.1 cell division protein ZapA -
  IG605_RS02320 (IG605_002310) - 480457..481104 (+) 648 WP_193407860.1 5-formyltetrahydrofolate cyclo-ligase -
  IG605_RS02325 (IG605_002315) nadR 481101..482354 (-) 1254 WP_102117200.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IG605_RS02330 (IG605_002320) radA 482474..483856 (-) 1383 WP_193407859.1 DNA repair protein RadA Machinery gene
  IG605_RS02335 (IG605_002325) serB 483874..484851 (-) 978 WP_193397868.1 phosphoserine phosphatase -
  IG605_RS02340 (IG605_002330) - 485008..485706 (+) 699 WP_102117197.1 YtjB family periplasmic protein -
  IG605_RS02345 (IG605_002335) - 485761..486681 (-) 921 WP_193397869.1 hypothetical protein -
  IG605_RS02350 (IG605_002340) prfC 486973..488562 (+) 1590 WP_193397870.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49575.19 Da        Isoelectric Point: 7.4218

>NTDB_id=507708 IG605_RS02330 WP_193407859.1 482474..483856(-) (radA) [Pectobacterium quasiaquaticum strain A398-S21-F17]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNIITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=507708 IG605_RS02330 WP_193407859.1 482474..483856(-) (radA) [Pectobacterium quasiaquaticum strain A398-S21-F17]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACATCATTACCGAAGTCCGTCTGGCCTCGGCGTCAGTATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAAAGCGCTGGCGTCAGCCGAGTACAAAAGCTCTCGGAAATCAGTCTCGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGTGCGATTCTGATCGGCGGTAGCCCCGGTGCGGG
TAAAAGTACACTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGGGAAGAATCAT
TACAGCAGGTGGCAATGCGGGCGCACAGACTCAACCTGCCGACTCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATCGCCGAACAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGAAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACCCGCTTCGCCAAAACGCGCGGTGTTG
CCATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCTGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAACT
GGGCGTGTTCGCGATGACGGAACAGGGTCTACGCGAGATCAGTAATCCGTCGGCAATTTTCCTCAGTCGCGGGGACGAAA
TCACGTCCGGCAGTTCAGTCATGGTGGTGTGGGAAGGTACACGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGGCTAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAATCGCCTGGCGATCCTGCTGGCGGTATTACATCG
CCACGGCGGCTTGCAGATGTCCGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGATCGCCCACTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGTGAAATCCGCCCGGTTCCGAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-32)

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426