Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IG609_RS02460 Genome accession   NZ_CP065177
Coordinates   518591..519973 (-) Length   460 a.a.
NCBI ID   WP_193400824.1    Uniprot ID   A0A9Q2ES86
Organism   Pectobacterium quasiaquaticum strain A477-S1-J17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513591..524973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG609_RS02430 (IG609_002420) pepP 513791..515116 (-) 1326 WP_193400819.1 Xaa-Pro aminopeptidase -
  IG609_RS02435 (IG609_002425) - 515173..515760 (-) 588 WP_193400821.1 YecA family protein -
  IG609_RS02440 (IG609_002430) zapA 515947..516276 (+) 330 WP_010284667.1 cell division protein ZapA -
  IG609_RS02450 (IG609_002440) - 516574..517221 (+) 648 WP_193400823.1 5-formyltetrahydrofolate cyclo-ligase -
  IG609_RS02455 (IG609_002445) nadR 517218..518471 (-) 1254 WP_102117200.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  IG609_RS02460 (IG609_002450) radA 518591..519973 (-) 1383 WP_193400824.1 DNA repair protein RadA Machinery gene
  IG609_RS02465 (IG609_002455) serB 519991..520968 (-) 978 WP_193397868.1 phosphoserine phosphatase -
  IG609_RS02470 (IG609_002460) - 521125..521823 (+) 699 WP_102117197.1 YtjB family periplasmic protein -
  IG609_RS02475 (IG609_002465) - 521878..522798 (-) 921 WP_193397869.1 hypothetical protein -
  IG609_RS02480 (IG609_002470) prfC 523090..524679 (+) 1590 WP_193397870.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49593.16 Da        Isoelectric Point: 7.4218

>NTDB_id=507686 IG609_RS02460 WP_193400824.1 518591..519973(-) (radA) [Pectobacterium quasiaquaticum strain A477-S1-J17]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVIWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALTILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=507686 IG609_RS02460 WP_193400824.1 518591..519973(-) (radA) [Pectobacterium quasiaquaticum strain A477-S1-J17]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGTCTGGCCTCGGCGTCAGTATCACGTTCCGACCGTCTCACCGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACTGGC
TTTCAGGAATTTGACCGCGTTTTGGGCGGCGGCGTCGTTCCGGGCAGTGCGATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACACTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGCGAAGAATCAT
TACAGCAGGTGGCGATGCGGGCGCATCGTCTCAACCTGCCGACCCAGAATCTCAATATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCGGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACCCGCTTCGCCAAAACGCGCGGTGTTG
CCATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCTGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGTACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAACT
GGGCGTGTTCGCGATGACGGAACAGGGTCTACGCGAGATCAGTAATCCGTCGGCAATTTTCCTCAGCCGCGGGGACGAAG
TCACGTCCGGCAGTTCGGTCATGGTGATATGGGAAGGCACGCGTCCGCTGCTGGTCGAAATTCAGGCACTGGTGGATCAA
TCGATGATGGCTAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAATCGCCTGGCGATCCTGCTGGCGGTATTACATCG
CCACGGCGGCTTGCAGATGTCCGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGATCGCCCACTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGTGAAATCCGCCCGGTTCCGAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TGACGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426